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freebsd-ports/biology
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Pav Lucistnik cfaac59499 Add blast, a powerful software package for gene and protein identification, 
using sensitive, selective and rapid similarity searches of protein and
nucleotide sequence databases.

PR:		ports/69636
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar>
2004-11-11 21:35:04 +00:00
..
act SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
ariadne Add ariadne 1.3, programs to compare protein sequences and 2004-06-22 14:29:59 +00:00
artemis SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
avida The build should be fixed now, so remove BROKEN mark. 2004-09-23 07:10:32 +00:00
babel - Remove obsolete MASTER_SITES 2004-06-08 08:19:40 +00:00
biojava Add SIZE. 2004-01-27 20:51:07 +00:00
blast Add blast, a powerful software package for gene and protein identification, 2004-11-11 21:35:04 +00:00
chemeq SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
clustalw - Add an end-of-string to each line of the input 2003-08-28 04:51:02 +00:00
coalesce SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
crimap SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
deft BROKEN on 5.x: Does not install 2004-09-18 16:35:47 +00:00
distribfold Drop maintainership 2004-06-24 14:28:12 +00:00
dna-qc BROKEN on alpha 5.x: does not compile 2004-02-23 03:54:36 +00:00
emboss Fix MASTER_SITES: 2004-06-23 08:20:21 +00:00
fasta Update to fix fetch. Rework PORTVERSION to be more like biology/fasta3 2004-07-01 06:24:01 +00:00
fasta3 Chase mastersite and fix checksum to unbreak. (Changes are inclusion of a 2004-07-01 03:02:23 +00:00
fastdnaml Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
flip SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
fluctuate SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
garlic Make portlint happy by replacing space to tab 2004-05-06 19:49:54 +00:00
genpak Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
gff2ps [PATCH] biology/gff2ps distsite fix 2004-06-01 02:23:41 +00:00
gperiodic Bump PORTREVISIONS for all ports that depend on atk or pango to ease in the 2004-11-07 22:37:47 +00:00
grappa This is now buildable on 5.x, remove BROKEN. 2004-08-17 10:29:40 +00:00
hmmer SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
kinemage SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
L-Breeder Bump PORTREVISIONS for all ports that depend on atk or pango to ease in the 2004-11-07 22:37:47 +00:00
lamarc Clear moonlight beckons. 2003-03-07 06:14:21 +00:00
libgenome Apply a big libtool patch to allow porters to use the libtool installed by 2004-07-09 17:43:11 +00:00
lsysexp Bump PORTREVISIONS for all ports that depend on atk or pango to ease in the 2004-11-07 22:37:47 +00:00
migrate Update to 1.7.6.1. 2004-06-30 06:55:56 +00:00
molden BROKEN: Checksum mismatch 2004-06-20 08:40:40 +00:00
mopac BROKEN on 5.x: Does not install 2004-09-19 01:18:56 +00:00
nab Now installs on FreeBSD 5.x. 2004-10-28 21:01:05 +00:00
ncbi-toolkit - Update to 2004.06.16 2004-11-01 22:21:02 +00:00
nclever SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
ortep3 - Update MASTER_SITES 2004-06-02 03:32:57 +00:00
p5-AcePerl - Honor CFLAGS 2004-04-16 08:08:11 +00:00
p5-bioperl - add missing MAN1 and MAN3 2004-09-03 17:04:38 +00:00
paml Update to 3.14 2004-11-06 03:55:37 +00:00
phylip - Update to 3.62 2004-10-11 22:26:34 +00:00
platon - Update to last snapshot 2003-12-07 00:29:56 +00:00
povchem After patching, remove the carriage-return characters from povchem.c 2004-04-07 15:39:34 +00:00
primer3 SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
psi88 - Fix MASTER_SITES 2004-05-23 07:36:35 +00:00
py-biopython - Fix build on amd64 (crude hack to pass -fPIC to c++ compiles) 2004-11-06 23:12:14 +00:00
pymol Avoid the use of != statements in ports Makefile 2004-10-24 03:37:02 +00:00
rasmol Update to version 2.7.2.1.1 2004-07-09 18:01:11 +00:00
recombine SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
ruby-bio Fix distsite 2004-07-06 14:31:55 +00:00
seaview unbreak, only minor changes in the distfiles (see PR) 2004-05-18 14:59:02 +00:00
seqio SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
sim4 - Update to version 2003.09.21 2004-03-12 13:53:23 +00:00
spdbv Correct a typo: s/linux-opera/linux-openmotif/g. 2004-11-01 22:26:55 +00:00
t_coffee SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
tinker Upgrade to latest revision to make fetchable again. 2004-09-25 08:06:08 +00:00
treepuzzle - Update to 5.2 2004-07-30 22:02:00 +00:00
treeviewx Bump PORTREVISIONS for all ports that depend on atk or pango to ease in the 2004-11-07 22:37:47 +00:00
tRNAscan-SE SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
wise SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
xdrawchem Add openbabel dependency (bento log forwarded by kris). 2004-04-09 00:59:36 +00:00
xmolwt SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
Makefile Add blast, a powerful software package for gene and protein identification, 2004-11-11 21:35:04 +00:00