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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-23 04:23:08 +00:00
freebsd-ports/biology
Martin Wilke 727fa1d184 - Update to 6.2.05
PR:		179061
Submitted by:	Ports Fury
2013-05-29 05:25:49 +00:00
..
adun
ariadne
artemis
avida Convert USE_NCURSES by USES=ncurses 2013-05-06 15:34:17 +00:00
babel
biococoa
biojava
blast
blat
boinc-simap Use bsd.port.options.mk instead of bsd.port.{pre|post}.mk 2013-04-29 12:20:35 +00:00
chemeq Convert USE_BISON to USES= bison 2013-03-08 11:32:11 +00:00
clustalw
consed
crux - adoption of optionsNG 2013-03-18 06:48:55 +00:00
dotter - Mark broken checksum mismatch 2013-03-25 01:41:31 +00:00
embassy - Convert USE_ICONV=yes to USES=iconv 2013-04-27 08:50:46 +00:00
emboss
fasta
fasta3
fastdnaml
finchtv
fluctuate
garlic
genpak
gff2ps
gmap
gperiodic - Convert USE_GETTEXT to USES (part 3) 2013-04-24 18:10:30 +00:00
grappa
hmmer
iolib - Update to 1.13.0 2013-04-30 15:41:49 +00:00
jalview
lagan
lamarc
libgenome
libsbml - adoption of optionsNG 2013-03-18 06:50:12 +00:00
linux-foldingathome
mafft
mapm3
migrate - Update to 3.5.1 2013-05-26 07:49:47 +00:00
molden - Update to 5.0.6 2013-04-26 06:57:37 +00:00
mopac Workaround the way mopac installs executables. 2013-04-29 17:30:09 +00:00
mrbayes
mummer
muscle
ncbi-toolkit - Update to 2012.06.20 2013-03-14 05:27:58 +00:00
njplot
ortep3
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite For perl@ owned ports: 2013-03-29 00:44:53 +00:00
p5-Bio-Graphics Add missing item to pkg-plist reported by QAT but not reported by poudriere. 2013-03-03 15:22:43 +00:00
p5-Bio-MAGETAB For perl@ owned ports: 2013-03-29 00:44:53 +00:00
p5-Bio-NEXUS For perl@ owned ports: 2013-03-29 00:44:53 +00:00
p5-Bio-Phylo - Update to 0.52 [1] 2013-02-16 14:58:51 +00:00
p5-Bio-SCF
p5-bioperl
p5-bioperl-run
paml
phd2fasta Remove unneeded escaping 2013-04-26 16:23:13 +00:00
phrap
phred
phylip
phyml - Update to 20121109. 2013-02-04 10:07:30 +00:00
platon
plink
plinkseq Fix build with protobuf-2.5.0 2013-03-21 14:09:22 +00:00
povchem - remove empty files 2013-02-15 08:57:19 +00:00
primer3
protomol - adoption of optionsNG 2013-03-18 06:54:39 +00:00
psi88
py-biopython
pycogent
pyfasta
pymol
python-nexus
rasmol
recombine
ruby-bio - adoption of optionsNG 2013-03-18 06:55:42 +00:00
seaview - Update to 4.4.1 2013-03-26 01:08:40 +00:00
seqan - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
seqio
sim4
ssaha
t_coffee
tinker - Update to 6.2.05 2013-05-29 05:25:49 +00:00
treepuzzle
treeviewx
tRNAscan-SE
ugene Unbreak on 7.X and i386 systems. 2013-02-25 13:00:15 +00:00
velvet
wise Fix build by adding an explicit dep on pkgconf 2013-05-03 20:48:34 +00:00
xdrawchem - Strip header at request of original creator 2013-01-27 05:55:20 +00:00
xmolwt Finish converting the whole ports tree to USES=pkgconfig 2013-04-23 14:20:25 +00:00
Makefile Add Unipro UGENE, a free open-source crowss-platform bioinformatics software. 2013-02-23 04:50:48 +00:00