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SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. This port contains applications built on SeqAn and developed within the SeqAn project. Among them are famous read mappers like RazerS and Yara, as well as many other tools. Some applications are packaged seperately and the library can be found at biology/seqan. WWW: http://www.seqan.de/ PR: 204127 Submitted by: Hannes Hauswedell <h2+fbsdports@fsfe.org>
161 lines
4.3 KiB
Plaintext
161 lines
4.3 KiB
Plaintext
bin/alf
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bin/bam2roi
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bin/bed_sort.sh
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bin/bisar
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bin/casbar
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%%RM_I386%%bin/compute_gain
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bin/dfi
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%%RM_I386%%bin/fiona
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bin/four2three
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bin/fx_bam_coverage
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bin/gff_sort.sh
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bin/gustaf
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bin/gustaf_mate_joining
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bin/insegt
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bin/mason_frag_sequencing
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bin/mason_genome
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bin/mason_materializer
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bin/mason_methylation
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bin/mason_simulator
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bin/mason_splicing
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bin/mason_variator
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bin/micro_razers
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bin/pair_align
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bin/param_chooser
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bin/plot.awk
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bin/ps2pswLinks.gawk
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bin/rabema_build_gold_standard
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bin/rabema_evaluate
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bin/rabema_prepare_sam
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bin/razers
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bin/razers3
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bin/rep_sep
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bin/roi_feature_projection
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bin/roi_plot_9.sh
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bin/roi_plot_thumbnails
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bin/roi_sort.sh
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bin/s4_join
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bin/s4_search
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bin/sak
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bin/sam2matrix
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bin/samcat
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bin/seqan_tcoffee
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bin/seqcons2
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bin/sgip
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bin/snp_store
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%%RM_I386%%bin/splazers
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bin/stellar
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bin/tree_recon
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bin/yara_indexer
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bin/yara_mapper
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share/doc/alf/LICENSE
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share/doc/alf/README
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share/doc/alf/example/small.fasta
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share/doc/bs_tools/LICENSE
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share/doc/bs_tools/README
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share/doc/dfi/LICENSE
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share/doc/dfi/README
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share/doc/dfi/example/fasta1.fa
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share/doc/dfi/example/fasta2.fa
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%%RM_I386%%share/doc/fiona/LICENSE
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%%RM_I386%%share/doc/fiona/README
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%%RM_I386%%share/doc/fiona/example/reads.fa
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share/doc/fx_tools/LICENSE
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share/doc/fx_tools/README
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share/doc/gustaf/LICENSE
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share/doc/gustaf/README
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share/doc/gustaf/example/adeno.fa
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share/doc/gustaf/example/adeno_modified.fa
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share/doc/gustaf/example/adeno_modified_reads.fa
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share/doc/gustaf/example/stellar.gff
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share/doc/insegt/LICENSE
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share/doc/insegt/README
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share/doc/insegt/example/annoOutput.gff
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share/doc/insegt/example/annotations.gff
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share/doc/insegt/example/readOutput.gff
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share/doc/insegt/example/tupleOutput.gff
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share/doc/mason2/LICENSE
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share/doc/mason2/README
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share/doc/mason2/README.mason_frag_sequencing
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share/doc/mason2/README.mason_genome
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share/doc/mason2/README.mason_materializer
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share/doc/mason2/README.mason_methylation
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share/doc/mason2/README.mason_simulator
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share/doc/mason2/README.mason_splicing
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share/doc/mason2/README.mason_variator
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share/doc/mason2/example/adeno_virus.fa
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share/doc/micro_razers/LICENSE
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share/doc/micro_razers/README
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share/doc/micro_razers/example/genome.fa
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share/doc/micro_razers/example/reads.fa
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share/doc/micro_razers/example/reads.fa.result
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share/doc/ngs_roi/LICENSE
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share/doc/ngs_roi/R/ngsroi_0.1.tar.gz
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share/doc/ngs_roi/R/ngsroi_0.1.zip
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share/doc/ngs_roi/README
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share/doc/ngs_roi/example/dmel.bed
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share/doc/ngs_roi/example/dmel.gtf
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share/doc/ngs_roi/example/example.bam
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share/doc/pair_align/LICENSE
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share/doc/pair_align/README
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share/doc/param_chooser/LICENSE
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share/doc/param_chooser/README
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share/doc/rabema/LICENSE
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share/doc/rabema/README
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share/doc/razers/LICENSE
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share/doc/razers/README
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share/doc/razers/example/genome.fa
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share/doc/razers/example/reads.fa
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share/doc/razers/example/reads2.fa
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share/doc/razers3/LICENSE
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share/doc/razers3/README
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share/doc/razers3/example/genome.fa
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share/doc/razers3/example/reads.fa
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share/doc/razers3/example/reads2.fa
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share/doc/rep_sep/LICENSE
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share/doc/rep_sep/README
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share/doc/sak/LICENSE
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share/doc/sak/README
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share/doc/sak/README.sak.txt
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share/doc/sak/man/sak.1
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share/doc/sam2matrix/LICENSE
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share/doc/sam2matrix/README
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share/doc/samcat/LICENSE
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share/doc/samcat/README
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share/doc/searchjoin/LICENSE
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share/doc/searchjoin/README
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share/doc/seqan_tcoffee/LICENSE
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share/doc/seqan_tcoffee/README
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share/doc/seqan_tcoffee/example/seq.fa
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share/doc/seqcons2/LICENSE
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share/doc/seqcons2/README
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share/doc/sgip/LICENSE
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share/doc/sgip/README
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share/doc/sgip/example/iso_m2D_m196.A01
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share/doc/sgip/example/iso_r01_m200.A00
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share/doc/sgip/example/iso_r01_m200.A01
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share/doc/sgip/example/iso_r01_m200.B00
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share/doc/sgip/example/iso_r01_m200.B01
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share/doc/sgip/example/latin-4
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share/doc/sgip/example/lattice-4
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share/doc/sgip/example/sts-7
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share/doc/snp_store/LICENSE
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share/doc/snp_store/README
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share/doc/snp_store/example/exampleGenome.fa
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share/doc/snp_store/example/exampleReads.gff
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%%RM_I386%%share/doc/splazers/LICENSE
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%%RM_I386%%share/doc/splazers/README
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%%RM_I386%%share/doc/splazers/example/genome.fa
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%%RM_I386%%share/doc/splazers/example/reads.fa
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%%RM_I386%%share/doc/splazers/example/reads.fa.result
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share/doc/stellar/LICENSE
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share/doc/stellar/README
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share/doc/stellar/example/NC_001474.fasta
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share/doc/stellar/example/NC_001477.fasta
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share/doc/stellar/example/reads.fasta
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share/doc/tree_recon/LICENSE
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share/doc/tree_recon/README
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share/doc/tree_recon/example/example.dist
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share/doc/yara/LICENSE
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share/doc/yara/README.rst
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