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Code Issues Releases Activity
11a3094a47
freebsd-ports/biology/tinker/pkg-plist
Thomas Zander 50fd87108f - Un-break fetch stage: the name scheme of the source tarballs has changed 
- Add LICENSE*
- Remove conflict with hunspell:
  - Rename the 'analyze' binary to 'analyze_t'
  - put a note in pkg-message.in
- Pet portlint

PR:		ports/187569
Submitted by:	Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp>
Approved by:	thierry (mentor)
MFH:	2014Q2
2014-04-22 19:28:18 +00:00

616 lines
22 KiB
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bin/alchemy
bin/analyze_t
bin/anneal
bin/archive
bin/bar
bin/correlate
bin/crystal
bin/diffuse
bin/distgeom
bin/document
bin/dynamic
bin/gda
bin/intedit
bin/intxyz
bin/minimize
bin/minirot
bin/minrigid
bin/molxyz
bin/monte
bin/newton
bin/newtrot
bin/nucleic
bin/optimize
bin/optirot
bin/optrigid
bin/path
bin/pdbxyz
bin/polarize
bin/poledit
bin/potential
bin/prmedit
bin/protein
bin/pss
bin/pssrigid
bin/pssrot
bin/radial
bin/saddle
bin/scan
bin/sniffer
bin/spacefill
bin/spectrum
bin/superpose
bin/sybylxyz
bin/testgrad
bin/testhess
bin/testpair
bin/testpol
bin/testrot
bin/timer
bin/timerot
bin/torsfit
bin/valence
bin/vibbig
bin/vibrate
bin/vibrot
bin/xtalfit
bin/xtalmin
bin/xyzedit
bin/xyzint
bin/xyzpdb
bin/xyzsybyl
%%PORTDOCS%%%%DOCSDIR%%/0README
%%PORTDOCS%%%%DOCSDIR%%/ffe-guide.pdf
%%PORTDOCS%%%%DOCSDIR%%/guide.pdf
%%PORTDOCS%%%%DOCSDIR%%/license.pdf
%%PORTDOCS%%%%DOCSDIR%%/license.txt
%%PORTDOCS%%%%DOCSDIR%%/summary.pdf
%%PORTDOCS%%%%DOCSDIR%%/summary.txt
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/0README
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alatet.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alatet.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alatet.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alatet.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alkane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alkane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ammonia.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ammonia.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/amoeba.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/amoeba.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/arach.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/arach.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/arach.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/azulene.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/azulene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/azulene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.make
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bdna.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bearing.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bearing.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bearing2.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzamidine.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzamidine.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzbox.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzbox.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzene.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/benzene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/book.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/book.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl2.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl2.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl3.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bowl3.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bucky.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bucky.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bucky.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane2.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane2.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane2.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butanes.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butanes.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butanes.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butanex.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butanex.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butopls.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butopls.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butopls.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butopls2.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butopls2.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butopls2.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c5.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c5.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c5.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c5.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7a.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7a.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7a.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7a.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7e.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7e.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7e.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c7e.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cage.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cage.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/calmodulin.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/calmodulin.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/calmodulin.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/calmodulin.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cawater.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cawater.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cln025.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cln025.make
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cln025.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cln025.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cln025.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/copper.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/copper.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cpentene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cpentene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambinx.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambinx.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crown.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crown.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crown.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cychept.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cychept.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cychept.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclo.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclo.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclo.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclo2.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclo2.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cyclo2.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cycprop.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cycprop.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dang.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dang.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/deltorphin.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/deltorphin.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/deltorphin.make
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/deltorphin.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/deltorphin.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr2.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr2.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dhfr2.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/diamond.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/diamond.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/diene.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/diene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/diene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dimethane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dimethane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dmp.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dmp.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/enkephalin.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/enkephalin.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/enkephalin.make
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/enkephalin.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/enkephalin.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ermer.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ermer.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ermer.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ester.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ester.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethane.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethanol.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethanol.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethanol.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ether.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ether.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/etherbox.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/etherbox.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/etherbox.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethylene.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethylene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ethylene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/flane.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/flane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/flane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/form.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/form.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/formbig.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/formbig.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/formbox.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/formbox.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/formbox.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/formopls.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/formopls.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/formopls.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/furan.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/furan.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/furan.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/glucose.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/glucose.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/glycerol.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/glycerol.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/glycerol.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/graphite.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/graphite.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/helix.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/helix.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/helix.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/heme.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/heme.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexane.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexanes.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexanes.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hexanes.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/iamoeba.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/iamoeba.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imidazole.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imidazole.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imidazole.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imine.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imine.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/imine.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/indole.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/indole.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/lactam.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/lactam.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/lipid.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/lipid.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/lj38.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/lj38.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/melittin.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/melittin.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/melittin.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/melittin.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/membrane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/membrane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/meohbox.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/meohbox.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methanol.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methanol.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mgwater.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mgwater.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mm3.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mm3.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nacl.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nacl.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nada.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nada.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthalene.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthalene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthalene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthax.frac
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthax.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/naphthax.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nitrile.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nitrile.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nitrogen.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nitrogen.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nitrogen.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nma.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nma.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nma.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nmabox.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nmabox.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nmabox.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nmf.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nmf.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nstilbene.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nstilbene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nstilbene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane2.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane2.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octane2.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octene.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/octene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/palmitate.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/palmitate.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/palmitate.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pentane.frac
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pentane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pentane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.make
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/peptide.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/phenanth.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/phenanth.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/photo.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/photo.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/photo.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/photo.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pol3.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pol3.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/polyala.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/polyala.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/prism.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/prism.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/propane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/propane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/propellane.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/propellane.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/propellane.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/propyne.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/propyne.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pyridine.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pyridine.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pyridine.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pyrrole.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pyrrole.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pyrrole.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/retinoic.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/retinoic.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ring.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ring.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/skunk.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/skunk.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spc.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spc.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sterol.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sterol.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/styrene.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/styrene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/styrene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/terphenyl.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/terphenyl.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tfe.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tfe.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/thiadiene.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/thiadiene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/thiadiene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/thiophene.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/thiophene.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/thiophene.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/thr.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/thr.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/thr.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip3f.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip3f.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip3p.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip3p.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip4f.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip4f.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip4p.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip4p.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip5p.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tip5p.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/trpcage.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/trpcage.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/trpcage.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/trpcage.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ubiquitin.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ubiquitin.pdb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ubiquitin.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ubiquitin.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ubiquitin2.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ubiquitin2.seq
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ubiquitin2.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/urea.frac
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/urea.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/urea.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterball.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterball.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterbig.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterbig.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterbox.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterbox.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterbox.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterdot.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterdot.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterdot.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterglobe.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterglobe.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterhuge.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterhuge.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterslab.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterslab.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/waterslab.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/watersmall.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/watersmall.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/watersmall.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/watertiny.dyn
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/watertiny.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/watertiny.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/white.int
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/white.key
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/white.xyz
%%DATADIR%%/bench/0README
%%DATADIR%%/bench/bench1.key
%%DATADIR%%/bench/bench1.run
%%DATADIR%%/bench/bench1.xyz
%%DATADIR%%/bench/bench2.key
%%DATADIR%%/bench/bench2.run
%%DATADIR%%/bench/bench2.xyz
%%DATADIR%%/bench/bench3.key
%%DATADIR%%/bench/bench3.run
%%DATADIR%%/bench/bench3.xyz
%%DATADIR%%/bench/bench4.dyn0
%%DATADIR%%/bench/bench4.key
%%DATADIR%%/bench/bench4.log
%%DATADIR%%/bench/bench4.run
%%DATADIR%%/bench/bench4.xyz
%%DATADIR%%/bench/bench5.dyn0
%%DATADIR%%/bench/bench5.key
%%DATADIR%%/bench/bench5.log
%%DATADIR%%/bench/bench5.run
%%DATADIR%%/bench/bench5.xyz
%%DATADIR%%/bench/bench6.key
%%DATADIR%%/bench/bench6.log
%%DATADIR%%/bench/bench6.run
%%DATADIR%%/bench/bench6.xyz
%%DATADIR%%/bench/bench7.key
%%DATADIR%%/bench/bench7.log
%%DATADIR%%/bench/bench7.run
%%DATADIR%%/bench/bench7.xyz
%%DATADIR%%/bench/results-2.3
%%DATADIR%%/bench/results-2.4
%%DATADIR%%/bench/results-2.9
%%DATADIR%%/bench/results-3.1
%%DATADIR%%/bench/results-3.2
%%DATADIR%%/bench/results-3.4
%%DATADIR%%/bench/results-3.5
%%DATADIR%%/bench/results-3.7
%%DATADIR%%/bench/results-3.8
%%DATADIR%%/bench/results-3.9
%%DATADIR%%/bench/results-4.0
%%DATADIR%%/bench/results-4.1
%%DATADIR%%/bench/results-4.2
%%DATADIR%%/bench/results-4.3
%%DATADIR%%/bench/results-5.0
%%DATADIR%%/bench/results-5.1
%%DATADIR%%/bench/results-6.0
%%DATADIR%%/bench/results-6.2
%%DATADIR%%/params/0README
%%DATADIR%%/params/amber94.prm
%%DATADIR%%/params/amber96.prm
%%DATADIR%%/params/amber98.prm
%%DATADIR%%/params/amber99.prm
%%DATADIR%%/params/amber99sb.prm
%%DATADIR%%/params/amoeba04.prm
%%DATADIR%%/params/amoeba09.prm
%%DATADIR%%/params/amoebabio09.prm
%%DATADIR%%/params/amoebapro04.prm
%%DATADIR%%/params/amoebapro13.prm
%%DATADIR%%/params/charmm19.prm
%%DATADIR%%/params/charmm22.prm
%%DATADIR%%/params/charmm22cmap.prm
%%DATADIR%%/params/dang.prm
%%DATADIR%%/params/hoch.prm
%%DATADIR%%/params/iwater.prm
%%DATADIR%%/params/mm2.prm
%%DATADIR%%/params/mm3.prm
%%DATADIR%%/params/mm3pro.prm
%%DATADIR%%/params/mmff.prm
%%DATADIR%%/params/oplsaa.prm
%%DATADIR%%/params/oplsaal.prm
%%DATADIR%%/params/oplsua.prm
%%DATADIR%%/params/smoothaa.prm
%%DATADIR%%/params/smoothua.prm
%%DATADIR%%/params/tiny.prm
%%DATADIR%%/params/water.prm
%%DATADIR%%/test/0README
%%DATADIR%%/test/anion.dat
%%DATADIR%%/test/anion.dyn0
%%DATADIR%%/test/anion.key
%%DATADIR%%/test/anion.log
%%DATADIR%%/test/anion.run
%%DATADIR%%/test/anion.xyz
%%DATADIR%%/test/argon.1st
%%DATADIR%%/test/argon.key
%%DATADIR%%/test/argon.log
%%DATADIR%%/test/argon.run
%%DATADIR%%/test/cluster.dat
%%DATADIR%%/test/cluster.key
%%DATADIR%%/test/cluster.log
%%DATADIR%%/test/cluster.run
%%DATADIR%%/test/cluster.xyz
%%DATADIR%%/test/crambin.key
%%DATADIR%%/test/crambin.log
%%DATADIR%%/test/crambin.pdb
%%DATADIR%%/test/crambin.run
%%DATADIR%%/test/cyclohex.boat
%%DATADIR%%/test/cyclohex.chair
%%DATADIR%%/test/cyclohex.key
%%DATADIR%%/test/cyclohex.log
%%DATADIR%%/test/cyclohex.run
%%DATADIR%%/test/dhfr.dyn
%%DATADIR%%/test/dhfr.key
%%DATADIR%%/test/dhfr.log
%%DATADIR%%/test/dhfr.run
%%DATADIR%%/test/dhfr.xyz
%%DATADIR%%/test/dialanine.key
%%DATADIR%%/test/dialanine.log
%%DATADIR%%/test/dialanine.run
%%DATADIR%%/test/dialanine.xyz
%%DATADIR%%/test/enkephalin.dat
%%DATADIR%%/test/enkephalin.key
%%DATADIR%%/test/enkephalin.log
%%DATADIR%%/test/enkephalin.run
%%DATADIR%%/test/ethanol.000
%%DATADIR%%/test/ethanol.020
%%DATADIR%%/test/ethanol.040
%%DATADIR%%/test/ethanol.060
%%DATADIR%%/test/ethanol.080
%%DATADIR%%/test/ethanol.100
%%DATADIR%%/test/ethanol.120
%%DATADIR%%/test/ethanol.140
%%DATADIR%%/test/ethanol.160
%%DATADIR%%/test/ethanol.180
%%DATADIR%%/test/ethanol.dat
%%DATADIR%%/test/ethanol.key
%%DATADIR%%/test/ethanol.log
%%DATADIR%%/test/ethanol.run
%%DATADIR%%/test/ethanol.xyz
%%DATADIR%%/test/formamide.cell
%%DATADIR%%/test/formamide.dat
%%DATADIR%%/test/formamide.key
%%DATADIR%%/test/formamide.log
%%DATADIR%%/test/formamide.run
%%DATADIR%%/test/gpcr.blk
%%DATADIR%%/test/gpcr.key
%%DATADIR%%/test/gpcr.log
%%DATADIR%%/test/gpcr.run
%%DATADIR%%/test/gpcr.xyz
%%DATADIR%%/test/helix.1st
%%DATADIR%%/test/helix.key
%%DATADIR%%/test/helix.log
%%DATADIR%%/test/helix.run
%%DATADIR%%/test/ice.key
%%DATADIR%%/test/ice.log
%%DATADIR%%/test/ice.run
%%DATADIR%%/test/ice.xyz
%%DATADIR%%/test/ifabp.dat
%%DATADIR%%/test/ifabp.key
%%DATADIR%%/test/ifabp.log
%%DATADIR%%/test/ifabp.run
%%DATADIR%%/test/ifabp.xyz
%%DATADIR%%/test/salt.cell
%%DATADIR%%/test/salt.key
%%DATADIR%%/test/salt.log
%%DATADIR%%/test/salt.run
%%DATADIR%%/test/tetraala.dat
%%DATADIR%%/test/tetraala.key
%%DATADIR%%/test/tetraala.log
%%DATADIR%%/test/tetraala.run
%%DATADIR%%/test/water.key
%%DATADIR%%/test/water.log
%%DATADIR%%/test/water.pot
%%DATADIR%%/test/water.run
%%DATADIR%%/test/water.xyz
%%DATADIR%%/tinker.txt
@dirrm %%DATADIR%%/test
@dirrm %%DATADIR%%/params
@dirrm %%DATADIR%%/bench
@dirrm %%DATADIR%%
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
%%PORTDOCS%%@dirrm %%DOCSDIR%%
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