Mathieu Arnold c6457ffef4 Update ports in the [bcd]* categories to not use GH_COMMIT. ... With minor cleanups to make things simpler. With hat: portmgr Sponsored by: Absolight		2015-05-06 15:16:53 +00:00
..
ariadne
artemis
avida
babel
biococoa	Convert bsd.gnustep.mk to USES=gnustep	2015-04-09 07:44:41 +00:00
biojava
blat
chemeq
clustalw
consed	${ENV} does not exist, it is called ${SETENV}.	2015-04-13 14:49:37 +00:00
crux
emboss
fasta
fasta3
fastdnaml
fluctuate
garlic
gff2ps
gmap
gperiodic
grappa
hmmer	- Remove deprecated option	2015-04-02 15:41:31 +00:00
htslib	Update ports in the [bcd]* categories to not use GH_COMMIT.	2015-05-06 15:16:53 +00:00
iolib
jalview
lagan
lamarc
libsbml
linux-foldingathome
mafft
mapm3
migrate	Mark as broken unfetchable ports	2015-04-05 17:55:35 +00:00
molden
mopac
mrbayes
mummer
muscle
ncbi-blast+	- Unbreak	2015-05-04 06:08:59 +00:00
ncbi-toolkit
njplot	Mark as broken unfetchable ports	2015-04-05 17:55:35 +00:00
ortep3	Mark as broken unfetchable ports	2015-04-05 17:55:35 +00:00
p5-AcePerl	- Add LICENSE	2015-03-28 17:20:45 +00:00
p5-Bio-ASN1-EntrezGene	biology/p5-Bio-ASN1-EntrezGene: bump PORTEPOCH	2015-04-11 15:19:03 +00:00
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl
p5-bioperl-run
paml	Update biology/paml to 4.8a and unbreak.	2015-04-10 15:39:01 +00:00
phrap
phred
phylip
phyml
platon	biology/platon: Upgrade from 05 MAR 2015 => 30 MAR 2015 to unbreak	2015-04-11 15:41:22 +00:00
plink
plinkseq
povchem	Mark as broken unfetchable ports	2015-04-05 17:55:35 +00:00
primer3
protomol
psi88
py-biopython
pycogent
pyfasta
python-nexus
recombine
ruby-bio	biology/ruby-bio: mark broken with ruby 2.2	2015-04-03 13:50:38 +00:00
samtools	Update ports in the [bcd]* categories to not use GH_COMMIT.	2015-05-06 15:16:53 +00:00
seaview	biology/seaview: Unbreak -- it fetches fine	2015-04-11 15:49:57 +00:00
seqan
seqio
seqtools	biology/seqtools: 4.32 -> 4.33	2015-03-31 18:04:25 +00:00
sim4
ssaha
t_coffee
tinker
treepuzzle
treeviewx
tRNAscan-SE
ugene
velvet
wise
xmolwt
Makefile