1
0
mirror of https://git.FreeBSD.org/ports.git synced 2024-12-15 03:14:23 +00:00
freebsd-ports/biology
Johannes M Dieterich 8afffd1d5c biology/molden: unbreak by chasing latest intransparent distfile update.
Reviewed by:	swills (mentor)
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D12521
2017-09-28 02:43:40 +00:00
..
ariadne
artemis
avida
babel
bcftools Update math/gsl to 2.4 2017-07-03 20:38:11 +00:00
bedtools
biococoa Update GNUstep core libraries. 2017-08-21 13:26:28 +00:00
blat - Update WWW 2017-06-10 09:01:19 +00:00
bowtie Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
bowtie2 Update tbb to 2018 and bump dependent ports' revisions 2017-09-17 07:03:14 +00:00
bwa
cd-hit Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
cdbfasta
chemeq
clustalw
consed
crux Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
diamond biology/diamond: Update to version 0.9.10 2017-08-15 20:45:08 +00:00
emboss
fasta
fasta3
fastdnaml
fastool
fasttree Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
fastx-toolkit
fluctuate
garlic
gff2ps
gmap
gperiodic
grappa
hmmer Begin deorbit burn of ia64. We have not attempted to build packages for 2017-06-25 00:29:09 +00:00
htslib
iolib
jalview
jellyfish Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
lagan
lamarc
libgtextutils
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden biology/molden: unbreak by chasing latest intransparent distfile update. 2017-09-28 02:43:40 +00:00
mopac Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
mrbayes Update devel/readline to 7.0 patch 3 2017-06-27 13:46:53 +00:00
mummer
muscle
ncbi-blast+ Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
ncbi-toolkit
njplot
p5-AcePerl Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Bio-ASN1-EntrezGene Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Bio-Coordinate Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Bio-Das Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Bio-Das-Lite Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Bio-FeatureIO Add p5-Bio-FeatureIO 1.6.905 2017-09-15 19:17:17 +00:00
p5-Bio-GFF3 Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Bio-Glite
p5-Bio-Graphics Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Bio-SCF
p5-BioPerl Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-BioPerl-Run Update to 1.007002 2017-09-15 19:17:44 +00:00
p5-transdecoder
paml
phrap
phred
phylip
phyml Update to 3.3.20170530 2017-09-04 00:01:36 +00:00
plink Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
plinkseq
primer3
protomol
psi88 Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
py-biom-format
py-biopython - update to 1.70 2017-08-18 12:57:06 +00:00
py-bx-python
py-pysam
pycogent
pyfasta
python-nexus - Update to 1.53 2017-07-23 08:15:07 +00:00
recombine
ruby-bio
rubygem-bio
samtools
seaview biology/seaview: Update version 4.6.1=>4.6.2 2017-07-21 17:33:10 +00:00
seqan
seqan1
seqan-apps devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
seqio
seqtools Remove USES=execinfo. 2017-09-22 10:48:28 +00:00
sim4
slclust
ssaha biology/ssaha: unbreak with gcc7 2017-09-24 18:45:24 +00:00
t_coffee Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
tinker Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
treepuzzle
trimmomatic
tRNAscan-SE
ugene Remove USES=execinfo. 2017-09-22 10:48:28 +00:00
vcftools
velvet
wise
xmolwt
Makefile Add p5-Bio-FeatureIO 1.6.905 2017-09-15 19:17:17 +00:00