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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-24 04:33:24 +00:00
freebsd-ports/biology
Martin Wilke bd48d39657 - Chase database/sqlite3 slib bump
Approved by:	portmgr (myself)
2014-06-27 17:21:06 +00:00
..
ariadne
artemis
avida
babel
biococoa
biojava - add stage support 2014-06-01 10:37:22 +00:00
blast Mark as broken: no distinfo provided 2014-06-22 22:06:01 +00:00
blat Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mk 2014-06-25 08:55:55 +00:00
boinc-simap
chemeq
clustalw Multiple ports: reset maintainers 2014-05-26 02:33:38 +00:00
consed Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
crux
embassy - Mark BROKEN 2014-06-26 14:38:10 +00:00
emboss Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
fasta
fasta3
fastdnaml
fluctuate
garlic
gff2ps
gmap
gperiodic
grappa
hmmer
iolib - I forgot to svn add a new patch 2014-05-31 18:03:08 +00:00
jalview
lagan
lamarc
libsbml - Update to 5.10.0 2014-05-13 07:04:17 +00:00
linux-foldingathome
mafft Add DOCS and EXAMPLE options to biology/mafft 2014-05-31 04:18:18 +00:00
mapm3
migrate
molden Catch a couple of missing convertsion to :tu/:tl 2014-05-05 11:15:53 +00:00
mopac
mrbayes
mummer Fix compilation on 10+ (clang) 2014-06-27 14:14:01 +00:00
muscle Update to 3.8.31. 2014-06-17 21:36:06 +00:00
ncbi-toolkit
njplot - add stage support 2014-06-01 11:26:39 +00:00
ortep3
p5-AcePerl Remove all the bootstrap files (.bs) from the plists. 2014-06-10 12:14:12 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics Stagify, remove BROKEN. 2014-06-07 01:54:41 +00:00
p5-Bio-MAGETAB - update to 1.31 2014-05-16 13:33:02 +00:00
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF Remove all the bootstrap files (.bs) from the plists. 2014-06-10 12:14:12 +00:00
p5-bioperl - Update to 1.6.923 2014-05-30 15:46:05 +00:00
p5-bioperl-run Mark BROKEN: Fails to configure 2014-06-19 21:31:16 +00:00
paml
phd2fasta Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
phrap Replace maintainer's email address with one that seems to work 2014-05-10 18:07:52 +00:00
phred Replace maintainer's email address with one that seems to work 2014-05-10 18:07:52 +00:00
phylip
phyml
platon Mark as broken: no distinfo provided 2014-06-22 22:07:25 +00:00
plink
plinkseq
povchem
primer3 Quote ${CC} and similar variables in MAKE_ARGS. 2014-05-20 19:32:39 +00:00
protomol
psi88
py-biopython
pycogent - Stage support [1] 2014-05-02 14:00:13 +00:00
pyfasta
pymol
python-nexus Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
recombine
ruby-bio
seaview - Update to 4.5.2 2014-06-04 06:28:56 +00:00
seqan - add stage support 2014-06-01 11:42:17 +00:00
seqio
seqtools - Chase database/sqlite3 slib bump 2014-06-27 17:21:06 +00:00
sim4
ssaha
t_coffee Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
tinker
treepuzzle
treeviewx Unbreak 2014-06-04 20:08:15 +00:00
tRNAscan-SE Support stage 2014-05-05 10:26:15 +00:00
ugene
velvet Fix shebang line in Perl and Python scripts. 2014-06-20 12:54:29 +00:00
wise
xmolwt
Makefile