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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-23 04:23:08 +00:00
freebsd-ports/biology
2014-07-24 09:48:03 +00:00
..
ariadne
artemis
avida
babel
biococoa
biojava - add stage support 2014-06-01 10:37:22 +00:00
blast Mark as broken: no distinfo provided 2014-06-22 22:06:01 +00:00
blat Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mk 2014-06-25 08:55:55 +00:00
boinc-simap
chemeq
clustalw Multiple ports: reset maintainers 2014-05-26 02:33:38 +00:00
consed Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
crux Reset maintainership for ports not staged with no pending PR 2014-07-23 16:44:27 +00:00
embassy Reset maintainership for ports not staged with no pending PR 2014-07-23 16:44:27 +00:00
emboss Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
fasta - Add staging support 2014-03-24 09:01:39 +00:00
fasta3
fastdnaml
fluctuate
garlic biology/garlic: Stage properly to unbreak 2014-07-17 10:13:06 +00:00
gff2ps
gmap
gperiodic Add staging support 2014-03-23 18:09:23 +00:00
grappa
hmmer Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS. 2014-07-15 14:54:54 +00:00
iolib - I forgot to svn add a new patch 2014-05-31 18:03:08 +00:00
jalview
lagan
lamarc
libsbml - Update to 5.10.0 2014-05-13 07:04:17 +00:00
linux-foldingathome Stagify. 2014-07-06 16:05:34 +00:00
mafft Add DOCS and EXAMPLE options to biology/mafft 2014-05-31 04:18:18 +00:00
mapm3
migrate
molden Catch a couple of missing convertsion to :tu/:tl 2014-05-05 11:15:53 +00:00
mopac - Add staging support 2014-03-23 18:10:41 +00:00
mrbayes
mummer biology/mummer: Use OPSYS with OSVERSION 2014-07-19 22:00:16 +00:00
muscle Update to 3.8.31. 2014-06-17 21:36:06 +00:00
ncbi-toolkit Add staging support 2014-03-23 20:50:54 +00:00
njplot - add stage support 2014-06-01 11:26:39 +00:00
ortep3
p5-AcePerl Remove all the bootstrap files (.bs) from the plists. 2014-06-10 12:14:12 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3 - Fix PLIST 2014-03-26 14:23:09 +00:00
p5-Bio-Glite
p5-Bio-Graphics biology/p5-Bio-Graphics: 2.37 -> 2.38 2014-07-24 09:48:03 +00:00
p5-Bio-MAGETAB - update to 1.31 2014-05-16 13:33:02 +00:00
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF Remove all the bootstrap files (.bs) from the plists. 2014-06-10 12:14:12 +00:00
p5-bioperl - Update to 1.6.923 2014-05-30 15:46:05 +00:00
p5-bioperl-run Reset maintainership for ports not staged with no pending PR 2014-07-23 16:44:27 +00:00
paml - Update to 4.8 2014-04-05 10:56:52 +00:00
phd2fasta Reset maintainership for ports not staged with no pending PR 2014-07-23 16:44:27 +00:00
phrap Replace maintainer's email address with one that seems to work 2014-05-10 18:07:52 +00:00
phred Replace maintainer's email address with one that seems to work 2014-05-10 18:07:52 +00:00
phylip The FreeBSD x11@ and graphics team proudly presents 2014-04-16 18:28:47 +00:00
phyml
platon biology/platon: Unbreak by hosting known distfiles elsewhere 2014-07-13 11:27:44 +00:00
plink
plinkseq - Switch to USES=libtool, drop .la files 2014-07-22 22:12:15 +00:00
povchem
primer3 Quote ${CC} and similar variables in MAKE_ARGS. 2014-05-20 19:32:39 +00:00
protomol Reset maintainership for ports not staged with no pending PR 2014-07-23 16:44:27 +00:00
psi88
py-biopython - Stage 2014-04-27 01:59:47 +00:00
pycogent - Stage support [1] 2014-05-02 14:00:13 +00:00
pyfasta - Update to 0.5.2 2014-04-06 04:05:43 +00:00
pymol Reset maintainership for ports not staged with no pending PR 2014-07-23 16:44:27 +00:00
python-nexus Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
recombine
ruby-bio Support stage 2014-04-07 13:01:26 +00:00
seaview - Update to 4.5.2 2014-06-04 06:28:56 +00:00
seqan Use gcc on all platforms. 2014-07-10 22:29:52 +00:00
seqio
seqtools Add OPTIONS_DEFINE=DOCS for ports with %%PORTDOCS%% in the plist. 2014-07-15 23:11:12 +00:00
sim4
ssaha
t_coffee Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
tinker - Un-break fetch stage: the name scheme of the source tarballs has changed 2014-04-22 19:28:18 +00:00
treepuzzle
treeviewx Unbreak 2014-06-04 20:08:15 +00:00
tRNAscan-SE Support stage 2014-05-05 10:26:15 +00:00
ugene
velvet Fix shebang line in Perl and Python scripts. 2014-06-20 12:54:29 +00:00
wise - Add staging support 2014-03-24 10:46:35 +00:00
xmolwt Add staging support 2014-03-24 11:06:56 +00:00
Makefile Remove expired ports: 2014-04-18 11:17:45 +00:00