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freebsd-ports/biology
History
Baptiste Daroussin a2b3272168 Cleanup plist
2014-12-20 17:27:08 +00:00
..
ariadne Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
artemis Cleanup plist 2014-10-20 07:10:48 +00:00
avida Cleanup plist 2014-12-20 17:27:08 +00:00
babel Rename biology/ patch-xy patches to reflect the files they modify. 2014-07-28 14:22:16 +00:00
biococoa Cleanup plist 2014-10-20 07:10:48 +00:00
biojava - add stage support 2014-06-01 10:37:22 +00:00
blat Cleanup plist 2014-12-20 17:27:08 +00:00
boinc-simap Fix pkg-plist 2014-10-08 10:06:03 +00:00
chemeq
clustalw Multiple ports: reset maintainers 2014-05-26 02:33:38 +00:00
consed update ports: 2014-08-23 18:04:58 +00:00
crux Cleanup plist 2014-10-20 07:10:48 +00:00
emboss Cleanup plist 2014-10-20 07:10:48 +00:00
fasta
fasta3 Cleanup plist 2014-10-20 07:10:48 +00:00
fastdnaml Cleanup plist 2014-10-20 07:10:48 +00:00
fluctuate
garlic Cleanup plist 2014-10-20 07:10:48 +00:00
gff2ps
gmap Fix MASTER_SITES 2014-09-05 09:25:45 +00:00
gperiodic
grappa
hmmer Cleanup plist 2014-10-20 07:10:48 +00:00
htslib HTSlib is an implementation of a unified C library for accessing common file 2014-12-14 22:35:07 +00:00
iolib Cleanup plist 2014-10-20 07:10:48 +00:00
jalview Cleanup plist 2014-10-20 07:10:48 +00:00
lagan
lamarc
libsbml Cleanup plist 2014-10-20 07:10:48 +00:00
linux-foldingathome Cleanup plist 2014-12-20 17:27:08 +00:00
mafft Cleanup plist 2014-10-20 07:10:48 +00:00
mapm3
migrate - Update to 3.6.5 2014-12-06 14:54:48 +00:00
molden Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
mopac - Upadate biology/mopac to version 1.15 2014-12-16 22:10:23 +00:00
mrbayes Fix build on -current by un-clobbering LDFLAGS. Also, don't 2014-08-15 16:37:37 +00:00
mummer Cleanup plist 2014-10-20 07:10:48 +00:00
muscle Update to 3.8.31. 2014-06-17 21:36:06 +00:00
ncbi-blast Add new port biology/ncbi-blast 2014-10-06 20:16:35 +00:00
ncbi-toolkit Cleanup plist 2014-10-20 07:10:48 +00:00
njplot - add stage support 2014-06-01 11:26:39 +00:00
ortep3 Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
p5-AcePerl Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-ASN1-EntrezGene Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-Das Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-Das-Lite Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-GFF3 Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-Glite Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-Graphics - Update to 2.39 2014-12-07 07:44:06 +00:00
p5-Bio-MAGETAB Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-NEXUS Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-Phylo - Update to 0.58 2014-12-07 04:41:47 +00:00
p5-Bio-SCF Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-bioperl Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-bioperl-run Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
paml Cleanup plist 2014-10-20 07:10:48 +00:00
phrap - Fix various distinfo errors 2014-10-16 08:55:30 +00:00
phred update ports: 2014-08-23 18:04:58 +00:00
phylip - Update to version 3.696 2014-11-02 14:13:59 +00:00
phyml
platon Cleanup plist 2014-10-20 07:10:48 +00:00
plink Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
plinkseq - Update to 0.10 2014-10-12 03:16:10 +00:00
povchem Cleanup plist 2014-12-20 17:27:08 +00:00
primer3 Quote ${CC} and similar variables in MAKE_ARGS. 2014-05-20 19:32:39 +00:00
protomol Cleanup plist 2014-10-20 07:10:48 +00:00
psi88 Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
py-biopython - Convert ports from benchmarks/ and biology/ to new USES=python 2014-10-19 07:38:11 +00:00
pycogent - Convert ports from benchmarks/ and biology/ to new USES=python 2014-10-19 07:38:11 +00:00
pyfasta - Convert ports from benchmarks/ and biology/ to new USES=python 2014-10-19 07:38:11 +00:00
python-nexus - Convert ports from benchmarks/ and biology/ to new USES=python 2014-10-19 07:38:11 +00:00
recombine
ruby-bio Cleanup plist 2014-10-20 07:10:48 +00:00
samtools Samtools implements various utilities for post-processing alignments in the 2014-12-15 21:59:19 +00:00
seaview Cleanup plist 2014-12-20 17:27:08 +00:00
seqan Cleanup plist 2014-10-20 07:10:48 +00:00
seqio
seqtools biology/seqtools: 4.30 -> 4.31 2014-12-13 18:10:31 +00:00
sim4
ssaha Cleanup plist 2014-12-20 17:27:08 +00:00
t_coffee Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
tinker Cleanup plist 2014-10-20 07:10:48 +00:00
treepuzzle
treeviewx Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
tRNAscan-SE Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
ugene Update to version 1.15.0. 2014-12-03 01:40:54 +00:00
velvet Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
wise Cleanup plist 2014-12-20 17:27:08 +00:00
xmolwt devel/glib12 x11-toolkits/gtk12: 2014-09-13 15:11:27 +00:00
Makefile Samtools implements various utilities for post-processing alignments in the 2014-12-15 21:59:19 +00:00