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9053d41234
Patch Makefile.in.top to cleanly support DESTDIR Also resolves 225002, conflict with libproj PR: 226037 Reported by: wen Reviewed by: mat rene Approved by: jrm Differential Revision: https://reviews.freebsd.org/D14854
3989 lines
207 KiB
Plaintext
3989 lines
207 KiB
Plaintext
bin/blast_formatter
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bin/blastdb_aliastool
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bin/blastdbcheck
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bin/blastdbcmd
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bin/blastdbcp
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bin/blastn
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bin/blastp
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bin/blastx
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bin/convert2blastmask
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bin/datatool
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bin/deltablast
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bin/dustmasker
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bin/gc_cli
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bin/gene_info_reader
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bin/legacy_blast.pl
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bin/makeblastdb
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bin/makembindex
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bin/makeprofiledb
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bin/project_tree_builder
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bin/psiblast
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bin/rpsblast
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bin/rpstblastn
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bin/run_with_lock
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bin/seedtop
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bin/segmasker
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bin/seqdb_demo
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bin/seqdb_perf
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bin/tblastn
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bin/tblastx
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bin/update_blastdb.pl
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bin/windowmasker
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bin/windowmasker_2.2.22_adapter.py
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include/ncbi-tools++/algo/blast/api/bl2seq.hpp
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include/ncbi-tools++/algo/blast/api/blast_advprot_options.hpp
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include/ncbi-tools++/algo/blast/api/blast_aux.hpp
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include/ncbi-tools++/algo/blast/api/blast_dbindex.hpp
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include/ncbi-tools++/algo/blast/api/blast_exception.hpp
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include/ncbi-tools++/algo/blast/api/blast_mtlock.hpp
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include/ncbi-tools++/algo/blast/api/blast_nucl_options.hpp
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include/ncbi-tools++/algo/blast/api/blast_options.hpp
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include/ncbi-tools++/algo/blast/api/blast_options_builder.hpp
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include/ncbi-tools++/algo/blast/api/blast_options_handle.hpp
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include/ncbi-tools++/algo/blast/api/blast_prot_options.hpp
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include/ncbi-tools++/algo/blast/api/blast_results.hpp
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include/ncbi-tools++/algo/blast/api/blast_rps_options.hpp
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include/ncbi-tools++/algo/blast/api/blast_seqinfosrc.hpp
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include/ncbi-tools++/algo/blast/api/blast_seqinfosrc_aux.hpp
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include/ncbi-tools++/algo/blast/api/blast_types.hpp
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include/ncbi-tools++/algo/blast/api/blastp_kmer_options.hpp
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include/ncbi-tools++/algo/blast/api/blastx_options.hpp
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include/ncbi-tools++/algo/blast/api/cdd_pssm_input.hpp
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include/ncbi-tools++/algo/blast/api/deltablast.hpp
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include/ncbi-tools++/algo/blast/api/deltablast_options.hpp
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include/ncbi-tools++/algo/blast/api/disc_nucl_options.hpp
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include/ncbi-tools++/algo/blast/api/effsearchspace_calc.hpp
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include/ncbi-tools++/algo/blast/api/hspstream_queue.hpp
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include/ncbi-tools++/algo/blast/api/local_blast.hpp
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include/ncbi-tools++/algo/blast/api/local_db_adapter.hpp
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include/ncbi-tools++/algo/blast/api/local_search.hpp
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include/ncbi-tools++/algo/blast/api/magicblast.hpp
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include/ncbi-tools++/algo/blast/api/magicblast_options.hpp
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include/ncbi-tools++/algo/blast/api/msa_pssm_input.hpp
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include/ncbi-tools++/algo/blast/api/objmgr_query_data.hpp
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include/ncbi-tools++/algo/blast/api/objmgrfree_query_data.hpp
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include/ncbi-tools++/algo/blast/api/phiblast_nucl_options.hpp
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include/ncbi-tools++/algo/blast/api/phiblast_prot_options.hpp
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include/ncbi-tools++/algo/blast/api/prelim_stage.hpp
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include/ncbi-tools++/algo/blast/api/psi_pssm_input.hpp
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include/ncbi-tools++/algo/blast/api/psibl2seq.hpp
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include/ncbi-tools++/algo/blast/api/psiblast.hpp
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include/ncbi-tools++/algo/blast/api/psiblast_iteration.hpp
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include/ncbi-tools++/algo/blast/api/psiblast_options.hpp
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include/ncbi-tools++/algo/blast/api/pssm_engine.hpp
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include/ncbi-tools++/algo/blast/api/pssm_input.hpp
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include/ncbi-tools++/algo/blast/api/query_data.hpp
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include/ncbi-tools++/algo/blast/api/remote_blast.hpp
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include/ncbi-tools++/algo/blast/api/remote_search.hpp
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include/ncbi-tools++/algo/blast/api/repeats_filter.hpp
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include/ncbi-tools++/algo/blast/api/rps_aux.hpp
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include/ncbi-tools++/algo/blast/api/rpsblast_local.hpp
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include/ncbi-tools++/algo/blast/api/rpstblastn_options.hpp
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include/ncbi-tools++/algo/blast/api/search_strategy.hpp
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include/ncbi-tools++/algo/blast/api/seedtop.hpp
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include/ncbi-tools++/algo/blast/api/seqinfosrc_seqdb.hpp
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include/ncbi-tools++/algo/blast/api/seqinfosrc_seqvec.hpp
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include/ncbi-tools++/algo/blast/api/seqsrc_multiseq.hpp
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include/ncbi-tools++/algo/blast/api/seqsrc_seqdb.hpp
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include/ncbi-tools++/algo/blast/api/setup_factory.hpp
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include/ncbi-tools++/algo/blast/api/sseqloc.hpp
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include/ncbi-tools++/algo/blast/api/subj_ranges_set.hpp
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include/ncbi-tools++/algo/blast/api/tblastn_options.hpp
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include/ncbi-tools++/algo/blast/api/tblastx_options.hpp
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include/ncbi-tools++/algo/blast/api/traceback_stage.hpp
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include/ncbi-tools++/algo/blast/api/uniform_search.hpp
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include/ncbi-tools++/algo/blast/api/version.hpp
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include/ncbi-tools++/algo/blast/api/windowmask_filter.hpp
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include/ncbi-tools++/algo/blast/blastinput/blast_args.hpp
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include/ncbi-tools++/algo/blast/blastinput/blast_asn1_input.hpp
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include/ncbi-tools++/algo/blast/blastinput/blast_fasta_input.hpp
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include/ncbi-tools++/algo/blast/blastinput/blast_input.hpp
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include/ncbi-tools++/algo/blast/blastinput/blast_input_aux.hpp
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include/ncbi-tools++/algo/blast/blastinput/blast_scope_src.hpp
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include/ncbi-tools++/algo/blast/blastinput/blastn_args.hpp
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include/ncbi-tools++/algo/blast/blastinput/blastp_args.hpp
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include/ncbi-tools++/algo/blast/blastinput/blastx_args.hpp
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include/ncbi-tools++/algo/blast/blastinput/cmdline_flags.hpp
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include/ncbi-tools++/algo/blast/blastinput/deltablast_args.hpp
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include/ncbi-tools++/algo/blast/blastinput/igblastn_args.hpp
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include/ncbi-tools++/algo/blast/blastinput/igblastp_args.hpp
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include/ncbi-tools++/algo/blast/blastinput/kblastp_args.hpp
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include/ncbi-tools++/algo/blast/blastinput/magicblast_args.hpp
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include/ncbi-tools++/algo/blast/blastinput/psiblast_args.hpp
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include/ncbi-tools++/algo/blast/blastinput/rmblastn_args.hpp
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include/ncbi-tools++/algo/blast/blastinput/rpsblast_args.hpp
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include/ncbi-tools++/algo/blast/blastinput/rpstblastn_args.hpp
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include/ncbi-tools++/algo/blast/blastinput/tblastn_args.hpp
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include/ncbi-tools++/algo/blast/blastinput/tblastx_args.hpp
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include/ncbi-tools++/algo/blast/composition_adjustment/compo_heap.h
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include/ncbi-tools++/algo/blast/composition_adjustment/compo_mode_condition.h
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include/ncbi-tools++/algo/blast/composition_adjustment/composition_adjustment.h
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include/ncbi-tools++/algo/blast/composition_adjustment/composition_constants.h
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include/ncbi-tools++/algo/blast/composition_adjustment/matrix_frequency_data.h
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include/ncbi-tools++/algo/blast/composition_adjustment/nlm_linear_algebra.h
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include/ncbi-tools++/algo/blast/composition_adjustment/optimize_target_freq.h
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include/ncbi-tools++/algo/blast/composition_adjustment/redo_alignment.h
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include/ncbi-tools++/algo/blast/composition_adjustment/smith_waterman.h
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include/ncbi-tools++/algo/blast/composition_adjustment/unified_pvalues.h
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include/ncbi-tools++/algo/blast/core/aa_ungapped.h
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include/ncbi-tools++/algo/blast/core/blast_aalookup.h
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include/ncbi-tools++/algo/blast/core/blast_aascan.h
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include/ncbi-tools++/algo/blast/core/blast_def.h
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include/ncbi-tools++/algo/blast/core/blast_diagnostics.h
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include/ncbi-tools++/algo/blast/core/blast_encoding.h
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include/ncbi-tools++/algo/blast/core/blast_engine.h
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include/ncbi-tools++/algo/blast/core/blast_export.h
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include/ncbi-tools++/algo/blast/core/blast_extend.h
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include/ncbi-tools++/algo/blast/core/blast_filter.h
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include/ncbi-tools++/algo/blast/core/blast_gapalign.h
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include/ncbi-tools++/algo/blast/core/blast_hits.h
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include/ncbi-tools++/algo/blast/core/blast_hspfilter.h
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include/ncbi-tools++/algo/blast/core/blast_hspstream.h
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include/ncbi-tools++/algo/blast/core/blast_kappa.h
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include/ncbi-tools++/algo/blast/core/blast_lookup.h
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include/ncbi-tools++/algo/blast/core/blast_message.h
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include/ncbi-tools++/algo/blast/core/blast_nalookup.h
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include/ncbi-tools++/algo/blast/core/blast_nascan.h
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include/ncbi-tools++/algo/blast/core/blast_options.h
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include/ncbi-tools++/algo/blast/core/blast_parameters.h
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include/ncbi-tools++/algo/blast/core/blast_program.h
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include/ncbi-tools++/algo/blast/core/blast_psi.h
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include/ncbi-tools++/algo/blast/core/blast_query_info.h
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include/ncbi-tools++/algo/blast/core/blast_rps.h
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include/ncbi-tools++/algo/blast/core/blast_seg.h
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include/ncbi-tools++/algo/blast/core/blast_seqsrc.h
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include/ncbi-tools++/algo/blast/core/blast_seqsrc_impl.h
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include/ncbi-tools++/algo/blast/core/blast_setup.h
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include/ncbi-tools++/algo/blast/core/blast_stat.h
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include/ncbi-tools++/algo/blast/core/blast_sw.h
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include/ncbi-tools++/algo/blast/core/blast_toolkit.h
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include/ncbi-tools++/algo/blast/core/blast_traceback.h
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include/ncbi-tools++/algo/blast/core/blast_tune.h
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include/ncbi-tools++/algo/blast/core/blast_util.h
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include/ncbi-tools++/algo/blast/core/gapinfo.h
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include/ncbi-tools++/algo/blast/core/gencode_singleton.h
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include/ncbi-tools++/algo/blast/core/greedy_align.h
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include/ncbi-tools++/algo/blast/core/hspfilter_besthit.h
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include/ncbi-tools++/algo/blast/core/hspfilter_collector.h
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include/ncbi-tools++/algo/blast/core/hspfilter_culling.h
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include/ncbi-tools++/algo/blast/core/hspfilter_mapper.h
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include/ncbi-tools++/algo/blast/core/link_hsps.h
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include/ncbi-tools++/algo/blast/core/lookup_util.h
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include/ncbi-tools++/algo/blast/core/lookup_wrap.h
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include/ncbi-tools++/algo/blast/core/mb_indexed_lookup.h
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include/ncbi-tools++/algo/blast/core/na_ungapped.h
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include/ncbi-tools++/algo/blast/core/ncbi_math.h
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include/ncbi-tools++/algo/blast/core/ncbi_std.h
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include/ncbi-tools++/algo/blast/core/pattern.h
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include/ncbi-tools++/algo/blast/core/phi_extend.h
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include/ncbi-tools++/algo/blast/core/phi_gapalign.h
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include/ncbi-tools++/algo/blast/core/phi_lookup.h
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include/ncbi-tools++/algo/blast/core/spliced_hits.h
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include/ncbi-tools++/algo/blast/core/split_query.h
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include/ncbi-tools++/algo/blast/dbindex/dbindex.hpp
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include/ncbi-tools++/algo/blast/dbindex/dbindex_sp.hpp
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include/ncbi-tools++/algo/blast/dbindex/sequence_istream.hpp
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include/ncbi-tools++/algo/blast/dbindex/sequence_istream_bdb.hpp
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include/ncbi-tools++/algo/blast/dbindex/sequence_istream_fasta.hpp
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include/ncbi-tools++/algo/blast/format/blast_async_format.hpp
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include/ncbi-tools++/algo/blast/format/blast_format.hpp
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include/ncbi-tools++/algo/blast/format/blastfmtutil.hpp
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include/ncbi-tools++/algo/blast/format/blastxml2_format.hpp
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include/ncbi-tools++/algo/blast/format/blastxml_format.hpp
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include/ncbi-tools++/algo/blast/format/build_archive.hpp
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include/ncbi-tools++/algo/blast/format/data4xml2format.hpp
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include/ncbi-tools++/algo/blast/format/data4xmlformat.hpp
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include/ncbi-tools++/algo/blast/format/sam.hpp
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include/ncbi-tools++/algo/blast/format/vecscreen_run.hpp
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include/ncbi-tools++/algo/blast/igblast/igblast.hpp
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include/ncbi-tools++/algo/blast/proteinkmer/blastkmer.hpp
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include/ncbi-tools++/algo/blast/proteinkmer/blastkmerindex.hpp
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include/ncbi-tools++/algo/blast/proteinkmer/blastkmeroptions.hpp
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include/ncbi-tools++/algo/blast/proteinkmer/blastkmerresults.hpp
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include/ncbi-tools++/algo/blast/proteinkmer/blastkmerutils.hpp
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include/ncbi-tools++/algo/blast/proteinkmer/kblastapi.hpp
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include/ncbi-tools++/algo/blast/proteinkmer/mhfile.hpp
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include/ncbi-tools++/algo/dustmask/sdust.tex
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include/ncbi-tools++/algo/dustmask/symdust.hpp
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include/ncbi-tools++/algo/segmask/segmask.hpp
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include/ncbi-tools++/algo/winmask/README.API
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include/ncbi-tools++/algo/winmask/seq_masker.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_cache_boost.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_istat.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_istat_ascii.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_istat_bin.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_istat_factory.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_istat_oascii.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_istat_obinary.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_ostat.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_ostat_ascii.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_ostat_bin.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_ostat_factory.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt_ascii.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_ostat_opt_bin.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_score.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_score_mean.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_score_mean_glob.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_score_min.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_uset_array.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_uset_hash.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_uset_simple.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_util.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_version.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_window.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_window_ambig.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_window_pattern.hpp
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include/ncbi-tools++/algo/winmask/seq_masker_window_pattern_ambig.hpp
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include/ncbi-tools++/algo/winmask/win_mask_config.hpp
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include/ncbi-tools++/algo/winmask/win_mask_counts_converter.hpp
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include/ncbi-tools++/algo/winmask/win_mask_dup_table.hpp
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include/ncbi-tools++/algo/winmask/win_mask_gen_counts.hpp
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include/ncbi-tools++/algo/winmask/win_mask_util.hpp
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include/ncbi-tools++/cgi/caf.hpp
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include/ncbi-tools++/cgi/cgi_exception.hpp
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include/ncbi-tools++/cgi/cgi_serial.hpp
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include/ncbi-tools++/cgi/cgi_session.hpp
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include/ncbi-tools++/cgi/cgi_util.hpp
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include/ncbi-tools++/cgi/cgiapp.hpp
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include/ncbi-tools++/cgi/cgiapp_cached.hpp
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include/ncbi-tools++/cgi/cgictx.hpp
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include/ncbi-tools++/cgi/error_codes.hpp
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include/ncbi-tools++/cgi/impl/cgi_entry_reader.hpp
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include/ncbi-tools++/cgi/ncbicgi.hpp
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include/ncbi-tools++/cgi/ncbicgir.hpp
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include/ncbi-tools++/cgi/ncbires.hpp
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include/ncbi-tools++/cgi/ref_args.hpp
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include/ncbi-tools++/cgi/user_agent.hpp
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include/ncbi-tools++/common/boost_skew_guard.hpp
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include/ncbi-tools++/common/config/ncbiconf_msvc.h
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include/ncbi-tools++/common/config/ncbiconf_universal.h
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include/ncbi-tools++/common/config/ncbiconf_xcode.h
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include/ncbi-tools++/common/header_template.hpp
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include/ncbi-tools++/common/metamodules_doxygen.h
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include/ncbi-tools++/common/ncbi_build_ver.h
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include/ncbi-tools++/common/ncbi_build_ver.h.in
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include/ncbi-tools++/common/ncbi_export.h
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include/ncbi-tools++/common/ncbi_package_ver.h
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include/ncbi-tools++/common/ncbi_pch_impl.hpp
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include/ncbi-tools++/common/ncbi_skew_guard.h
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include/ncbi-tools++/common/ncbi_source_ver.h
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include/ncbi-tools++/common/ncbiconf_impl.h
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include/ncbi-tools++/common/test_assert.h
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include/ncbi-tools++/common/test_assert_impl.h
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include/ncbi-tools++/common/test_data_path.h
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include/ncbi-tools++/connect/connect_export.h
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include/ncbi-tools++/connect/email_diag_handler.hpp
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include/ncbi-tools++/connect/error_codes.hpp
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include/ncbi-tools++/connect/impl/server_connection.hpp
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include/ncbi-tools++/connect/impl/thread_pool_for_server.hpp
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include/ncbi-tools++/connect/ncbi_base64.h
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include/ncbi-tools++/connect/ncbi_buffer.h
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include/ncbi-tools++/connect/ncbi_conn_exception.hpp
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include/ncbi-tools++/connect/ncbi_conn_reader_writer.hpp
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include/ncbi-tools++/connect/ncbi_conn_stream.hpp
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include/ncbi-tools++/connect/ncbi_conn_test.hpp
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include/ncbi-tools++/connect/ncbi_connection.h
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include/ncbi-tools++/connect/ncbi_connector.h
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include/ncbi-tools++/connect/ncbi_connutil.h
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include/ncbi-tools++/connect/ncbi_core.h
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include/ncbi-tools++/connect/ncbi_core_cxx.hpp
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include/ncbi-tools++/connect/ncbi_file_connector.h
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include/ncbi-tools++/connect/ncbi_ftp_connector.h
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include/ncbi-tools++/connect/ncbi_gnutls.h
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include/ncbi-tools++/connect/ncbi_heapmgr.h
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include/ncbi-tools++/connect/ncbi_host_info.h
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include/ncbi-tools++/connect/ncbi_http_connector.h
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include/ncbi-tools++/connect/ncbi_http_session.hpp
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include/ncbi-tools++/connect/ncbi_iprange.h
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include/ncbi-tools++/connect/ncbi_ipv6.h
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include/ncbi-tools++/connect/ncbi_lbos.hpp
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include/ncbi-tools++/connect/ncbi_localip.h
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include/ncbi-tools++/connect/ncbi_mbedtls.h
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include/ncbi-tools++/connect/ncbi_memory_connector.h
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include/ncbi-tools++/connect/ncbi_misc.hpp
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include/ncbi-tools++/objects/docsum/BaseURL_.hpp
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include/ncbi-tools++/objects/docsum/Component.hpp
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include/ncbi-tools++/objects/docsum/Component_.hpp
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include/ncbi-tools++/objects/docsum/Docsum_3_4_module.hpp
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include/ncbi-tools++/objects/docsum/ExchangeSet.hpp
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include/ncbi-tools++/objects/docsum/ExchangeSet_.hpp
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include/ncbi-tools++/objects/docsum/FxnSet.hpp
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include/ncbi-tools++/objects/docsum/FxnSet_.hpp
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include/ncbi-tools++/objects/docsum/MapLoc.hpp
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include/ncbi-tools++/objects/docsum/MapLoc_.hpp
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include/ncbi-tools++/objects/docsum/PrimarySequence.hpp
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include/ncbi-tools++/objects/docsum/PrimarySequence_.hpp
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include/ncbi-tools++/objects/docsum/Rs.hpp
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include/ncbi-tools++/objects/docsum/RsLinkout.hpp
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include/ncbi-tools++/objects/docsum/RsLinkout_.hpp
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include/ncbi-tools++/objects/docsum/RsStruct.hpp
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include/ncbi-tools++/objects/docsum/RsStruct_.hpp
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include/ncbi-tools++/objects/docsum/Rs_.hpp
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include/ncbi-tools++/objects/docsum/Ss.hpp
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include/ncbi-tools++/objects/docsum/Ss_.hpp
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include/ncbi-tools++/objects/docsum/docsum__.hpp
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include/ncbi-tools++/objects/entrez2/E2Reply.hpp
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include/ncbi-tools++/objects/entrez2/E2Reply_.hpp
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include/ncbi-tools++/objects/entrez2/E2Request.hpp
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include/ncbi-tools++/objects/entrez2/E2Request_.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_boolean_element.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_boolean_term.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_boolean_term_.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_db_id.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_db_id_.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_db_info.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_db_info_.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_docsum.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_docsum_.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_docsum_data.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_docsum_data_.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_docsum_list.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_docsum_list_.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_eval_boolean_.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_field_id.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_field_id_.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_get_links.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_hier_query.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_id_.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_info.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_request.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_term.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_term_list.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_term_pos.hpp
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include/ncbi-tools++/objects/entrez2/Entrez2_term_query_.hpp
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include/ncbi-tools++/objects/entrez2/NCBI_Entrez2_module.hpp
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include/ncbi-tools++/objects/entrez2/entrez2__.hpp
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include/ncbi-tools++/objects/entrez2/entrez2_client.hpp
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include/ncbi-tools++/objects/entrez2/entrez2_client_.hpp
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include/ncbi-tools++/objects/entrezgene/Entrezgene.hpp
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include/ncbi-tools++/objects/entrezgene/Entrezgene_.hpp
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include/ncbi-tools++/objects/entrezgene/Entrezgene_Set.hpp
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include/ncbi-tools++/objects/entrezgene/Entrezgene_Set_.hpp
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include/ncbi-tools++/objects/entrezgene/Gene_commentary.hpp
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include/ncbi-tools++/objects/entrezgene/Gene_source.hpp
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include/ncbi-tools++/objects/entrezgene/Gene_source_.hpp
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include/ncbi-tools++/objects/entrezgene/Gene_track.hpp
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include/ncbi-tools++/objects/entrezgene/Gene_track_.hpp
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include/ncbi-tools++/objects/entrezgene/Maps.hpp
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include/ncbi-tools++/objects/entrezgene/Maps_.hpp
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include/ncbi-tools++/objects/entrezgene/NCBI_Entrezgene_module.hpp
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include/ncbi-tools++/objects/entrezgene/Other_source.hpp
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include/ncbi-tools++/objects/entrezgene/Other_source_.hpp
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include/ncbi-tools++/objects/entrezgene/Xtra_Terms.hpp
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include/ncbi-tools++/objects/featdef/NCBI_FeatDef_module.hpp
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include/ncbi-tools++/objects/featdef/featdef__.hpp
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include/ncbi-tools++/objects/gbproj/AbstractProjectItem.hpp
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include/ncbi-tools++/objects/gbproj/LoaderDescriptor.hpp
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include/ncbi-tools++/objects/gbproj/LoaderDescriptor_.hpp
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include/ncbi-tools++/objects/gbproj/NCBI_GBProject_module.hpp
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include/ncbi-tools++/objects/gbproj/ProjectAnnot.hpp
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include/ncbi-tools++/objects/gbproj/ProjectFolder.hpp
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include/ncbi-tools++/objects/gbproj/ProjectFolder_.hpp
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include/ncbi-tools++/objects/gbproj/ProjectHistoryItem.hpp
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include/ncbi-tools++/objects/gbproj/ProjectHistoryItem_.hpp
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include/ncbi-tools++/objects/gbproj/ProjectItem.hpp
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include/ncbi-tools++/objects/gbproj/ProjectItem_.hpp
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include/ncbi-tools++/objects/gbproj/ViewDataLink.hpp
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include/ncbi-tools++/objects/gbproj/ViewDataLink_.hpp
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include/ncbi-tools++/objects/gbproj/ViewDescriptor.hpp
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include/ncbi-tools++/objects/gbproj/ViewDescriptor_.hpp
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include/ncbi-tools++/objects/gbproj/ViewMemento_.hpp
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include/ncbi-tools++/objects/gbproj/gbproj__.hpp
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include/ncbi-tools++/objects/gbproj/gbproj_export.h
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include/ncbi-tools++/objects/gbproj/igbproject.hpp
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include/ncbi-tools++/objects/gbseq/GBAltSeqData.hpp
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include/ncbi-tools++/objects/gbseq/GBAltSeqData_.hpp
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include/ncbi-tools++/objects/gbseq/GBAltSeqItem.hpp
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include/ncbi-tools++/objects/gbseq/GBAuthor.hpp
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include/ncbi-tools++/objects/gbseq/GBAuthor_.hpp
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include/ncbi-tools++/objects/gbseq/GBComment.hpp
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include/ncbi-tools++/objects/gbseq/GBCommentParagraph.hpp
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include/ncbi-tools++/objects/gbseq/GBComment_.hpp
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include/ncbi-tools++/objects/gbseq/GBFeature.hpp
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include/ncbi-tools++/objects/gbseq/GBFeatureSet_.hpp
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include/ncbi-tools++/objects/gbseq/GBFeature_.hpp
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include/ncbi-tools++/objects/gbseq/GBInterval.hpp
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include/ncbi-tools++/objects/gbseq/GBStrucComment.hpp
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include/ncbi-tools++/objects/gbseq/GBXref.hpp
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include/ncbi-tools++/objects/gbseq/GBXref_.hpp
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include/ncbi-tools++/objects/gbseq/NCBI_GBSeq_module.hpp
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include/ncbi-tools++/objects/gbseq/gbseq__.hpp
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include/ncbi-tools++/objects/general/Date.hpp
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include/ncbi-tools++/objects/general/Dbtag.hpp
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include/ncbi-tools++/objects/general/NCBI_General_module.hpp
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include/ncbi-tools++/objects/general/Name_std.hpp
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include/ncbi-tools++/objects/general/Name_std_.hpp
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include/ncbi-tools++/objects/general/Object_id.hpp
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include/ncbi-tools++/objects/general/Object_id_.hpp
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include/ncbi-tools++/objects/general/Person_id.hpp
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include/ncbi-tools++/objects/general/Person_id_.hpp
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include/ncbi-tools++/objects/general/User_field.hpp
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include/ncbi-tools++/objects/general/User_field_.hpp
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include/ncbi-tools++/objects/general/general_exception.hpp
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include/ncbi-tools++/objects/general/general_macros.hpp
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include/ncbi-tools++/objects/general/uoconv.hpp
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include/ncbi-tools++/objects/genesbyloc/GBL_Data.hpp
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include/ncbi-tools++/objects/genesbyloc/GBL_Data_.hpp
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include/ncbi-tools++/objects/genesbyloc/GBL_Gene.hpp
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include/ncbi-tools++/objects/genesbyloc/GBL_Gene_.hpp
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include/ncbi-tools++/objects/genesbyloc/GBL_Reply.hpp
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include/ncbi-tools++/objects/genesbyloc/GBL_Reply_.hpp
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include/ncbi-tools++/objects/genesbyloc/NCBI_GenesByLoc_module.hpp
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include/ncbi-tools++/objects/genesbyloc/genesbyloc__.hpp
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include/ncbi-tools++/objects/genomecoll/GCClientRequest.hpp
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include/ncbi-tools++/objects/genomecoll/GCClientRequest_.hpp
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include/ncbi-tools++/objects/genomecoll/GCClientResponse.hpp
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include/ncbi-tools++/objects/genomecoll/GCClient_AssembliesForSequ.hpp
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include/ncbi-tools++/objects/genomecoll/GCClient_AssemblyInfo.hpp
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include/ncbi-tools++/objects/genomecoll/GCClient_AttributeFlags.hpp
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include/ncbi-tools++/objects/genomecoll/GCClient_AttributeFlags_.hpp
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include/ncbi-tools++/objects/genomecoll/GCClient_EquivalentAssembl.hpp
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include/ncbi-tools++/objects/genomecoll/GC_DbTagAlias.hpp
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include/ncbi-tools++/objects/genomecoll/NCBI_GencollClient_module.hpp
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include/ncbi-tools++/objects/genomecoll/gencoll_client__.hpp
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include/ncbi-tools++/objects/genomecoll/genome_collection__.hpp
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include/ncbi-tools++/objects/genomecoll/genomic_collections_cli.hpp
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include/ncbi-tools++/objects/genomecoll/genomic_collections_cli_.hpp
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include/ncbi-tools++/objects/homologene/HG_Alignment.hpp
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include/ncbi-tools++/objects/homologene/HG_AlignmentSet.hpp
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include/ncbi-tools++/objects/homologene/HG_AlignmentSet_.hpp
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include/ncbi-tools++/objects/homologene/HG_Alignment_.hpp
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include/ncbi-tools++/objects/homologene/HG_Commentary.hpp
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include/ncbi-tools++/objects/homologene/HG_CommentaryContainer.hpp
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include/ncbi-tools++/objects/homologene/HG_CommentaryContainer_.hpp
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include/ncbi-tools++/objects/homologene/HG_CommentarySet.hpp
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include/ncbi-tools++/objects/homologene/HG_CommentarySet_.hpp
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include/ncbi-tools++/objects/homologene/HG_Commentary_.hpp
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include/ncbi-tools++/objects/homologene/HG_Domain.hpp
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include/ncbi-tools++/objects/homologene/HG_Domain_.hpp
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include/ncbi-tools++/objects/homologene/HG_Entry.hpp
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include/ncbi-tools++/objects/homologene/HG_EntrySet.hpp
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include/ncbi-tools++/objects/homologene/HG_EntrySet_.hpp
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include/ncbi-tools++/objects/homologene/HG_Entry_.hpp
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include/ncbi-tools++/objects/homologene/HG_Gene.hpp
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include/ncbi-tools++/objects/homologene/HG_Gene_.hpp
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include/ncbi-tools++/objects/homologene/HG_Link.hpp
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include/ncbi-tools++/objects/homologene/HG_Link_.hpp
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include/ncbi-tools++/objects/homologene/HG_Node.hpp
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include/ncbi-tools++/objects/homologene/HG_Node_.hpp
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include/ncbi-tools++/objects/homologene/HG_Node_id.hpp
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include/ncbi-tools++/objects/homologene/HG_Node_id_.hpp
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include/ncbi-tools++/objects/homologene/HG_Stats.hpp
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include/ncbi-tools++/objects/homologene/HG_Stats_.hpp
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include/ncbi-tools++/objects/homologene/HomoloGene_module.hpp
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include/ncbi-tools++/objects/homologene/homologene__.hpp
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include/ncbi-tools++/objects/id1/Entry_complexities.hpp
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include/ncbi-tools++/objects/id1/Entry_complexities_.hpp
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include/ncbi-tools++/objects/id1/ID1SeqEntry_info.hpp
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include/ncbi-tools++/objects/id1/ID1SeqEntry_info_.hpp
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include/ncbi-tools++/objects/id1/ID1Seq_hist.hpp
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include/ncbi-tools++/objects/id1/ID1Seq_hist_.hpp
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include/ncbi-tools++/objects/id1/ID1blob_info.hpp
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include/ncbi-tools++/objects/id1/ID1blob_info_.hpp
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include/ncbi-tools++/objects/id1/ID1server_back.hpp
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include/ncbi-tools++/objects/id1/ID1server_maxcomplex.hpp
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include/ncbi-tools++/objects/id1/ID1server_maxcomplex_.hpp
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include/ncbi-tools++/objects/id1/ID1server_request.hpp
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include/ncbi-tools++/objects/id1/ID1server_request_.hpp
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include/ncbi-tools++/objects/id1/NCBI_ID1Access_module.hpp
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include/ncbi-tools++/objects/id1/id1__.hpp
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include/ncbi-tools++/objects/id1/id1_client.hpp
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include/ncbi-tools++/objects/id1/id1_client_.hpp
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include/ncbi-tools++/objects/id2/ID2S_Reply_Get_Chunk.hpp
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include/ncbi-tools++/objects/id2/ID2S_Reply_Get_Split_Info.hpp
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include/ncbi-tools++/objects/id2/ID2S_Request_Get_Chunks.hpp
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include/ncbi-tools++/objects/id2/ID2_Blob_Id.hpp
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include/ncbi-tools++/objects/id2/ID2_Blob_Seq_id_.hpp
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include/ncbi-tools++/objects/id2/ID2_Blob_Seq_ids.hpp
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include/ncbi-tools++/objects/id2/ID2_Blob_Seq_ids_.hpp
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include/ncbi-tools++/objects/id2/ID2_Blob_State.hpp
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include/ncbi-tools++/objects/id2/ID2_Blob_State_.hpp
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include/ncbi-tools++/objects/id2/ID2_Error.hpp
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include/ncbi-tools++/objects/id2/ID2_Error_.hpp
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include/ncbi-tools++/objects/id2/ID2_Get_Blob_Details.hpp
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include/ncbi-tools++/objects/id2/ID2_Get_Blob_Details_.hpp
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include/ncbi-tools++/objects/id2/ID2_Param.hpp
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include/ncbi-tools++/objects/id2/ID2_Param_.hpp
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include/ncbi-tools++/objects/id2/ID2_Params.hpp
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include/ncbi-tools++/objects/id2/ID2_Params_.hpp
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include/ncbi-tools++/objects/id2/ID2_Reply.hpp
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include/ncbi-tools++/objects/id2/ID2_Reply_.hpp
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include/ncbi-tools++/objects/id2/ID2_Reply_Data.hpp
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include/ncbi-tools++/objects/id2/ID2_Reply_Data_.hpp
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include/ncbi-tools++/objects/id2/ID2_Reply_Get_Blob.hpp
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include/ncbi-tools++/objects/id2/ID2_Reply_Get_Blob_Id.hpp
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include/ncbi-tools++/objects/id2/ID2_Reply_Get_Blob_Id_.hpp
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include/ncbi-tools++/objects/id2/ID2_Reply_Get_Blob_Seq_ids.hpp
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include/ncbi-tools++/objects/id2/ID2_Reply_Get_Blob_Seq_ids_.hpp
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include/ncbi-tools++/objects/id2/ID2_Request.hpp
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include/ncbi-tools++/objects/id2/ID2_Request_Get_Blob_Id.hpp
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include/ncbi-tools++/objects/id2/ID2_Request_Get_Blob_Id_.hpp
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include/ncbi-tools++/objects/id2/ID2_Request_Get_Blob_Info.hpp
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include/ncbi-tools++/objects/id2/ID2_Request_Get_Blob_Info_.hpp
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include/ncbi-tools++/objects/id2/ID2_Request_Get_Packages_.hpp
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include/ncbi-tools++/objects/id2/ID2_Request_Get_Seq_id.hpp
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include/ncbi-tools++/objects/id2/ID2_Request_Get_Seq_id_.hpp
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include/ncbi-tools++/objects/id2/ID2_Request_Packet.hpp
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include/ncbi-tools++/objects/id2/ID2_Request_Packet_.hpp
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include/ncbi-tools++/objects/id2/ID2_Seq_id.hpp
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include/ncbi-tools++/objects/id2/ID2_Seq_id_.hpp
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include/ncbi-tools++/objects/id2/NCBI_ID2Access_module.hpp
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include/ncbi-tools++/objects/id2/id2__.hpp
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include/ncbi-tools++/objects/id2/id2_client.hpp
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include/ncbi-tools++/objects/id2/id2_client_.hpp
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include/ncbi-tools++/objects/id2/id2processor.hpp
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include/ncbi-tools++/objects/id2/id2processor_interface.hpp
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include/ncbi-tools++/objects/insdseq/INSDAltSeqData.hpp
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include/ncbi-tools++/objects/insdseq/INSDComment.hpp
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include/ncbi-tools++/objects/insdseq/INSDCommentParagraph.hpp
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include/ncbi-tools++/objects/insdseq/INSDFeature.hpp
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include/ncbi-tools++/objects/insdseq/INSDFeatureSet.hpp
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include/ncbi-tools++/objects/insdseq/INSDFeature_.hpp
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include/ncbi-tools++/objects/insdseq/INSDInterval.hpp
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include/ncbi-tools++/objects/insdseq/INSDKeyword.hpp
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include/ncbi-tools++/objects/insdseq/INSDQualifier.hpp
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include/ncbi-tools++/objects/insdseq/INSDQualifier_.hpp
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include/ncbi-tools++/objects/insdseq/INSDReference.hpp
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include/ncbi-tools++/objects/insdseq/INSDSecondary_accn.hpp
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include/ncbi-tools++/objects/insdseq/INSDSeq_.hpp
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include/ncbi-tools++/objects/insdseq/INSDSeqid.hpp
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include/ncbi-tools++/objects/insdseq/INSDSeqid_.hpp
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include/ncbi-tools++/objects/insdseq/INSDSet.hpp
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include/ncbi-tools++/objects/insdseq/INSDStrucComment.hpp
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include/ncbi-tools++/objects/insdseq/INSDStrucComment_.hpp
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include/ncbi-tools++/objects/insdseq/INSDXref.hpp
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include/ncbi-tools++/objects/insdseq/INSDXref_.hpp
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include/ncbi-tools++/objects/insdseq/INSD_INSDSeq_module.hpp
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include/ncbi-tools++/objects/insdseq/insdseq__.hpp
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include/ncbi-tools++/objects/macro/AECRParse_action.hpp
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include/ncbi-tools++/objects/macro/AECRParse_action_.hpp
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include/ncbi-tools++/objects/macro/AECR_action.hpp
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include/ncbi-tools++/objects/macro/AECR_action_.hpp
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include/ncbi-tools++/objects/macro/Action_choice.hpp
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include/ncbi-tools++/objects/macro/Action_choice_.hpp
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include/ncbi-tools++/objects/macro/Add_descriptor_list_action.hpp
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include/ncbi-tools++/objects/macro/Add_descriptor_list_action_.hpp
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include/ncbi-tools++/objects/macro/Add_file_action.hpp
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include/ncbi-tools++/objects/macro/Adjus_featu_for_gaps_actio.hpp
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include/ncbi-tools++/objects/macro/Apply_action.hpp
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include/ncbi-tools++/objects/macro/Apply_action_.hpp
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include/ncbi-tools++/objects/macro/Apply_feature_action.hpp
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include/ncbi-tools++/objects/macro/Apply_feature_action_.hpp
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include/ncbi-tools++/objects/macro/Apply_table_action.hpp
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include/ncbi-tools++/objects/macro/Author_fix_action.hpp
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include/ncbi-tools++/objects/macro/Author_fix_type_.hpp
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include/ncbi-tools++/objects/macro/Autod_misc_feat_parse_rule.hpp
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include/ncbi-tools++/objects/macro/Autodef_list_type.hpp
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include/ncbi-tools++/objects/macro/Bond_type.hpp
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include/ncbi-tools++/objects/macro/CDSGen_featur_type_constra.hpp
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include/ncbi-tools++/objects/macro/CDSGenePr_constraint_field.hpp
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include/ncbi-tools++/objects/macro/CDSGenePr_constraint_field_.hpp
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include/ncbi-tools++/objects/macro/CDSGenePro_qual_constraint.hpp
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include/ncbi-tools++/objects/macro/CDSGenePro_qual_constraint_.hpp
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include/ncbi-tools++/objects/macro/CDSGeneProt_field.hpp
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include/ncbi-tools++/objects/macro/CDSGeneProt_field_pair.hpp
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include/ncbi-tools++/objects/macro/CDSGeneProt_field_pair_.hpp
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include/ncbi-tools++/objects/macro/Cap_change.hpp
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include/ncbi-tools++/objects/macro/Cap_change_.hpp
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include/ncbi-tools++/objects/macro/Completedness_type.hpp
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include/ncbi-tools++/objects/macro/Constraint_choice.hpp
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include/ncbi-tools++/objects/macro/Convert_feature_action_.hpp
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include/ncbi-tools++/objects/macro/Convert_from_CDS_options.hpp
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include/ncbi-tools++/objects/macro/Convert_location_type.hpp
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include/ncbi-tools++/objects/macro/Convert_location_type_.hpp
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include/ncbi-tools++/objects/macro/Copy_action.hpp
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include/ncbi-tools++/objects/macro/Copy_action_.hpp
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include/ncbi-tools++/objects/macro/Create_TSA_ids_action.hpp
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include/ncbi-tools++/objects/macro/Create_TSA_ids_action_.hpp
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include/ncbi-tools++/objects/macro/Create_TSA_ids_src.hpp
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include/ncbi-tools++/objects/macro/DBLink_field_pair.hpp
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include/ncbi-tools++/objects/macro/Descriptor_type.hpp
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include/ncbi-tools++/objects/macro/ExistingTextOption.hpp
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include/ncbi-tools++/objects/mmdb1/Biostruc_residue_graph_set.hpp
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include/ncbi-tools++/objects/mmdb1/MMDB_module.hpp
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include/ncbi-tools++/objects/mmdb1/PCSubstance_id.hpp
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include/ncbi-tools++/objects/mmdb3/MMDB_Features_module.hpp
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include/ncbi-tools++/objects/mmdb3/Transform.hpp
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include/ncbi-tools++/objects/ncbimime/Biostruc_align.hpp
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include/ncbi-tools++/objects/ncbimime/Biostruc_seqs_aligns_cdd.hpp
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include/ncbi-tools++/objects/pcassay/PC_AssayDescription_.hpp
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include/ncbi-tools++/objects/pcassay/PC_AssayPanel.hpp
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include/ncbi-tools++/objects/pcassay/PC_AssayPanelMember.hpp
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include/ncbi-tools++/objects/pcassay/PC_AssayPanelMember_.hpp
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include/ncbi-tools++/objects/pcassay/PC_AssayPanelTestResult.hpp
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include/ncbi-tools++/objects/pcassay/PC_AssayPanelTestResult_.hpp
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include/ncbi-tools++/objects/pcassay/PC_AssayPanel_.hpp
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include/ncbi-tools++/objects/pcassay/PC_AssayResults.hpp
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include/ncbi-tools++/objects/pcassay/PC_AssayResults_.hpp
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include/ncbi-tools++/objects/pcassay/PC_AssaySubmit.hpp
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include/ncbi-tools++/objects/pcassay/PC_AssaySubmit_.hpp
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include/ncbi-tools++/objects/pcassay/PC_AssayTargetInfo.hpp
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include/ncbi-tools++/objects/pcassay/PC_AssayTargetInfo_.hpp
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include/ncbi-tools++/objects/pcassay/PC_CategorizedComment.hpp
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include/ncbi-tools++/objects/pcassay/PC_CategorizedComment_.hpp
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include/ncbi-tools++/objects/pcassay/PC_ConcentrationAttr.hpp
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include/ncbi-tools++/objects/pcassay/PC_ConcentrationAttr_.hpp
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include/ncbi-tools++/objects/pcassay/PC_IntegerMinMax.hpp
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include/ncbi-tools++/objects/pcassay/PC_IntegerMinMax_.hpp
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include/ncbi-tools++/objects/pcassay/PC_RealMinMax.hpp
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include/ncbi-tools++/objects/pcassay/PC_RealMinMax_.hpp
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include/ncbi-tools++/objects/pcassay/PC_ResultType.hpp
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include/ncbi-tools++/objects/pcassay/PC_ResultType_.hpp
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include/ncbi-tools++/objects/pcassay/pcassay__.hpp
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include/ncbi-tools++/objects/pcsubstance/NCBI_PCSubstance_module.hpp
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include/ncbi-tools++/objects/pcsubstance/PC_AtomInt.hpp
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include/ncbi-tools++/objects/pcsubstance/PC_AtomInt_.hpp
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include/ncbi-tools++/objects/pcsubstance/PC_AtomRadical.hpp
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include/ncbi-tools++/objects/pcsubstance/PC_AtomSource.hpp
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include/ncbi-tools++/objects/pcsubstance/PC_AtomString.hpp
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include/ncbi-tools++/objects/pcsubstance/PC_BondAnnotation.hpp
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include/ncbi-tools++/objects/pcsubstance/PC_BondAnnotation_.hpp
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include/ncbi-tools++/objects/pcsubstance/PC_Conformer.hpp
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include/ncbi-tools++/objects/pcsubstance/PC_DBTracking.hpp
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include/ncbi-tools++/objects/pcsubstance/PC_DrawAnnotations.hpp
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include/ncbi-tools++/objects/pcsubstance/PC_ID.hpp
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include/ncbi-tools++/objects/pcsubstance/PC_InfoData.hpp
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include/ncbi-tools++/objects/pcsubstance/PC_InfoData_.hpp
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include/ncbi-tools++/objects/pcsubstance/PC_MMDBSource.hpp
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include/ncbi-tools++/objects/pcsubstance/PC_StereoCenter.hpp
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include/ncbi-tools++/objects/pcsubstance/PC_XRefData.hpp
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include/ncbi-tools++/objects/pcsubstance/pcsubstance__.hpp
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include/ncbi-tools++/objects/proj/NCBI_Project_module.hpp
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include/ncbi-tools++/objects/proj/Project_id_.hpp
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include/ncbi-tools++/objects/pub/NCBI_Pub_module.hpp
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include/ncbi-tools++/objects/scoremat/LoopConstraint.hpp
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include/ncbi-tools++/objects/scoremat/LoopConstraint_.hpp
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include/ncbi-tools++/objects/scoremat/NCBI_ScoreMat_module.hpp
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include/ncbi-tools++/objects/scoremat/Pssm.hpp
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include/ncbi-tools++/objects/scoremat/Site_annot_set_.hpp
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include/ncbi-tools++/objects/scoremat/scoremat__.hpp
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include/ncbi-tools++/objects/seq/Align_def.hpp
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