mirror of
https://git.FreeBSD.org/ports.git
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71 lines
2.1 KiB
Makefile
71 lines
2.1 KiB
Makefile
PORTNAME= canu
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DISTVERSION= 2.2
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PORTREVISION= 3
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CATEGORIES= biology java perl5
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# Github auto-generated tarballs lack submodules
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MASTER_SITES= https://github.com/marbl/canu/releases/download/v${DISTVERSION}/
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Single molecule sequence assembler
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WWW= https://canu.readthedocs.io/
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LICENSE= GPLv2
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LICENSE_FILE= ${WRKDIR}/${PORTNAME}-${PORTVERSION}/README.license.GPL
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NOT_FOR_ARCHS= armv6 armv7 i386 mips powerpc powerpcspe
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NOT_FOR_ARCHS_REASON= Requires 64-bit processor
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LIB_DEPENDS= libboost_regex.so:devel/boost-libs
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RUN_DEPENDS= gnuplot:math/gnuplot
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USES= compiler:c++11-lang gmake localbase perl5 tar:xz
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USE_CXXSTD= c++14
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USE_JAVA= 8+
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JAVA_RUN= yes
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# Upstream Makefile compiles directly into ${DESTDIR}${PREFIX} rather than
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# using a separate install target.
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MAKE_ENV= DESTDIR=${WRKSRC} CANU_BUILD_ENV=ports
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WRKSRC_SUBDIR= src
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.include <bsd.port.pre.mk>
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# Parasail should be unbundled, but that would be a project because it's
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# currently woven into the canu code
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post-extract:
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.if ${ARCH} == "aarch64"
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${CP} ${FILESDIR}/cpuid_arm.c ${WRKSRC}/utility/src/parasail/cpuid.c
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.elif ${ARCH} == "powerpc64" || ${ARCH} == "powerpc64le"
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${CP} ${FILESDIR}/cpuid_ppc.c ${WRKSRC}/utility/src/parasail/cpuid.c
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.elif ${ARCH} != "amd64"
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${CP} ${FILESDIR}/cpuid_any.c ${WRKSRC}/utility/src/parasail/cpuid.c
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.endif
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pre-configure:
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@${REINPLACE_CMD} \
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-e 's|-O4||g' \
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-e 's|-funroll-loops||g' \
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-e 's|-fexpensive-optimizations||g' \
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${WRKSRC}/Makefile
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@${REINPLACE_CMD} \
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-e 's|RealBin/../lib/site_perl|RealBin/../${SITE_PERL_REL}/canu|g' \
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${WRKSRC}/pipelines/canu.pl
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# Upstream does not want to use lib/perl5/site_perl
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post-build:
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@${MKDIR} ${WRKSRC}/build/lib/perl5
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${MV} ${WRKSRC}/build/lib/site_perl ${WRKSRC}/build/lib/perl5
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do-install:
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@${MKDIR} ${STAGEDIR}${PREFIX}
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(cd ${WRKSRC}/build && ${COPYTREE_BIN} bin ${STAGEDIR}${PREFIX})
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# STRIP_CMD fails without this under poudriere
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@${CHMOD} u+w ${STAGEDIR}${PREFIX}/bin/*
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@${STRIP_CMD} \
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`file ${STAGEDIR}${PREFIX}/bin/* | ${GREP} ELF | cut -d : -f 1`
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(cd ${WRKSRC}/build && \
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${COPYTREE_SHARE} "lib share" ${STAGEDIR}${PREFIX})
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.include <bsd.port.post.mk>
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