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1fb0ae7cf9
freebsd-ports/science
History
Matthias Andree 1fb0ae7cf9 Security update OpenEXR and ilmbase to 2.2.1. 
While here, fix libIlmImfUtil_la_LDFLAGp so that when linking libIlmImfUtil,
the locally built libIlmImf gets precedence over the one in /usr/local,
to permit upgrades in a running system with the older version installed.

This changes the library's SONAME, so bump PORTREVISION of all dependees.

Unfortunately, this looks a bit too intrusive for an MFH to 2017Q4.

Security:	CVE-2017-9110
Security:	CVE-2017-9111
Security:	CVE-2017-9112
Security:	CVE-2017-9113
Security:	CVE-2017-9114
Security:	CVE-2017-9115
Security:	CVE-2017-9116
Security:	803879e9-4195-11e7-9b08-080027ef73ec
2017-12-01 01:58:23 +00:00
..
2d-rewriter
afni After r446199 libR.so has SONAME and was made visible for 2017-07-24 18:26:39 +00:00
avogadro Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
bddsolve devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
bft
bodr
brian Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
buddy
cdcl For ports that are marked BROKEN on armv6, and also fail to build on 2017-11-30 06:13:34 +00:00
cdf For ports that are marked BROKEN on armv6, and also fail to build on 2017-11-30 06:13:34 +00:00
cdo Update to 4.5.0 2017-10-21 20:18:16 +00:00
cgnslib Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
cgribex
checkmol
chemical-mime-data
chemps2 New port: science/chemps2: Spin-adapted implementation of DMRG for ab initio quantum chemistry 2017-11-23 05:58:51 +00:00
chemtool
chemtool-devel
clhep Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
colt
crf++
dcl Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
devisor
dkh New port: science/dkh: Wolf, Reiher, and Hess's Douglas-Kroll-Hess relativistic correction 2017-11-13 06:08:40 +00:00
dlpoly-classic Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
ecs Chase metis-edf's upgrade. 2017-11-16 20:55:27 +00:00
epte
erd New port: science/erd: AcesIII electron repulsion integrals 2017-11-14 18:44:05 +00:00
fastcap
fasthenry
fisicalab Update GNUstep core libraries. 2017-08-21 13:26:28 +00:00
fvcom Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
fvcom-mpi
fvm Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
gchemutils
gdma New port: science/gdma: Anthony Stone's Gaussian Distributed Multipole Analysis 2017-11-18 05:12:35 +00:00
getdp Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
ghemical Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
ghmm
gnudatalanguage Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
gramps Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
grib_api Update to 1.24.0 2017-11-12 19:09:49 +00:00
gromacs devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
gsmc
gtamsanalyzer Update GNUstep core libraries. 2017-08-21 13:26:28 +00:00
gwyddion Security update OpenEXR and ilmbase to 2.2.1. 2017-12-01 01:58:23 +00:00
h5utils - Update to 1.13 2017-07-26 13:42:00 +00:00
harminv Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
hdf Also not for armv7. Missed in previous sweep. 2017-11-30 06:43:49 +00:00
hdf5 Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
hdf5-18 Fix libhdf5-18.settings and suffix usage in tools. 2017-11-12 20:44:50 +00:00
hs-bio - Update The Glorious Glasgow Haskell Compiler to version 8.0.2 2017-08-08 17:21:45 +00:00
hypre Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
iboview devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
InsightToolkit science/InsightToolkit: Update to 4.12.2 2017-09-23 12:12:08 +00:00
isaac-cfd Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
jstrack
kalzium
kst2 Update to 4.5.0 2017-10-21 20:18:16 +00:00
lamprop
libaec Update to 1.0.2 2017-11-12 19:09:54 +00:00
libctl Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
libefp New port: science/libefp: Effective fragment potential method in quantum chemistry 2017-11-14 04:31:58 +00:00
libgeodecomp devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
libghemical Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
libint Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
libkml devel/google{test,mock}: update to 1.8.0.358 2017-09-25 00:51:02 +00:00
liblinear
liboglappth
libquantum
libsvm
libsvm-python
libxc Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
linsmith
massxpert Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
mbdyn Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
mcstas
mcstas-comps
medit
meep Fix options usage. 2017-10-27 12:19:20 +00:00
mei
metaf2xml Fix whitespace issues (mixed tab/spaces, alignment) in a few ports. 2017-10-31 14:51:53 +00:00
minc2 Update to 4.5.0 2017-10-21 20:18:16 +00:00
mol2ps
mpb Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
mpqc Remove USES=execinfo. 2017-09-22 10:48:28 +00:00
mpqc-mpich
ncs Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
netcdf Update to 4.5.0 2017-10-21 20:18:16 +00:00
netcdf-cxx Update to 4.5.0 2017-10-21 20:18:16 +00:00
netcdf-fortran Update to 4.5.0 2017-10-21 20:18:16 +00:00
nifticlib
openbabel
openkim For ports that are explicitly enabled on armv6, also enable them 2017-10-10 21:31:30 +00:00
orthanc - update from 1.1.0 to 1.3.0 2017-10-30 14:45:19 +00:00
orthanc-dicomweb - update from 0.3 to 0.4 2017-10-30 14:57:16 +00:00
orthanc-postgresql devel/boost-*: update to 1.65.1 2017-09-25 00:08:16 +00:00
orthanc-webviewer - update from 2.2 to 2.3 2017-10-30 14:20:02 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Geo-Coordinates-Converter-iArea Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit Fix license information for portgs that use "the same license as Perl". 2017-09-15 08:58:46 +00:00
paje Update GNUstep core libraries. 2017-08-21 13:26:28 +00:00
paraview Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
pcmsolver New port: science/pcmsolver: API for the Polarizable Continuum Model 2017-11-14 18:05:42 +00:00
pnetcdf Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
psychopy Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
pulseview science/pulseview: Update to version 0.4.0, switch to QT5. 2017-10-11 21:50:30 +00:00
py-cdo Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-coards
py-DendroPy Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-h5py Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-hcluster Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-mdp Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-mlpy Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-netCDF4 Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-obspy Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-paida Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-pupynere
py-pyaixi
py-pydicom
py-pysal Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-pyteomics Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-pyteomics.biolccc Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-qspin New port: science/py-qspin: Learn quantum spin and entanglement 2017-11-10 21:55:26 +00:00
py-scikit-fuzzy Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-scikit-learn Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-scikit-sparse Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-scimath Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-scipy Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
py-scoria Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-tensorflow Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
py-ws2300
pybrain Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
pycdf Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
pynn
qcl
qtresistors
R-cran-AMORE
R-cran-bayesm - Update to 3.1.0.1 2017-08-08 12:07:25 +00:00
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi - Update to 2.19 2017-08-28 11:50:57 +00:00
R-cran-epicalc
R-cran-etm
R-cran-kernlab - Add new port: science/R-cran-kernlab 2017-09-10 07:06:04 +00:00
R-cran-snow
R-cran-som
R-cran-udunits2
rubygem-ai4r Update LICENSE 2017-09-24 18:49:56 +00:00
rubygem-cdo Update to 1.3.4 2017-09-08 21:52:00 +00:00
rubygem-ruby-dcl
rubygem-ruby-netcdf Update to 4.5.0 2017-10-21 20:18:16 +00:00
sigrok-cli science/sigrok-cli: Update to version 0.7.0. 2017-10-11 21:48:56 +00:00
sigrok-firmware
sigrok-firmware-fx2lafw science/sigrok-firmware-fx2laf: Update to version 0.1.5. 2017-10-11 21:48:08 +00:00
sigrok-firmware-utils Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
silo Bump PORTREVISION for ports depending on the canonical version of GCC 2017-09-10 20:55:38 +00:00
simlib For ports that are marked NOT_FOR/ONLY_FOR armv6, also mark them so 2017-11-30 05:55:17 +00:00
simsmith
step Update math/libqalculate to 1.0.0a 2017-08-03 07:13:39 +00:00
svmlight
szip
tfel Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
udunits Convert PORTDATA=* and PORTDOCS=* to PLIST entries 2017-10-08 13:49:43 +00:00
v_sim Update to 4.5.0 2017-10-21 20:18:16 +00:00
veusz Convert Python ports to FLAVORS. 2017-11-30 15:50:30 +00:00
vmd Update to 4.5.0 2017-10-21 20:18:16 +00:00
voro++
xfce4-equake-plugin
xmakemol
Makefile New port: science/chemps2: Spin-adapted implementation of DMRG for ab initio quantum chemistry 2017-11-23 05:58:51 +00:00