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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-30 01:15:52 +00:00
freebsd-ports/science
2021-03-10 05:36:22 +00:00
..
2d-rewriter science/2d-rewriter: 2020-03-29 05:55:51 +00:00
abinit science/abinit: Update 9.2.2 -> 9.4.0 2021-02-26 18:03:45 +00:00
afni science/afni: update to 21.0.14 2021-03-09 08:50:51 +00:00
agrum science/agrum: Update 0.19.1 -> 0.19.2 2021-03-01 20:51:27 +00:00
aircraft-datcom science/aircraft-datcom: Unbreak build with GCC 10 2020-07-04 11:07:57 +00:00
ALPSCore Use shared OPENMPI_DESC 2021-03-07 22:33:28 +00:00
antioch - Upgrade math/eigen3 to 3.3.8; 2020-12-12 17:04:37 +00:00
apbs science/apbs: fix build on current 2020-08-27 18:37:59 +00:00
atompaw science/atompaw: Update 4.1.0.6 -> 4.1.1.0 2021-01-29 21:59:39 +00:00
avogadro2 science/avogadro2: Update 1.91.0 -> 1.93.0 2020-02-06 07:09:42 +00:00
avogadrolibs - Upgrade math/eigen3 to 3.3.8; 2020-12-12 17:04:37 +00:00
axom New port: science/axom: Infrastructure for development of multi-physics applications and tools 2020-10-09 03:42:21 +00:00
bagel Chase ScaLAPACK´s upgrade and resolve conflict between cblas and openblas. 2020-06-14 09:14:03 +00:00
bddsolve devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
berkeleygw Mark BROKEN on i386 and GCC 10: 2020-11-17 21:37:49 +00:00
bodr
buddy
cdcl Mark these ports as BROKEN: fail to fetch from mastersite. 2021-02-19 14:27:49 +00:00
cdf science/cdf: Unbreak build with GCC 10 2020-07-04 10:40:42 +00:00
cdk New port: science/cdk: Chemistry Development Kit 2020-01-09 16:48:21 +00:00
cdo science/cdo: fix build on powerpc64le, powerpc64 with CPUTYPE=power6 and newer with Clang 2021-02-16 16:42:28 +00:00
cgnslib science/cgnslib: rename unitconv to unitconv.sh, thus avoiding the conflict with 2020-12-26 11:48:36 +00:00
cgribex science/cgribex: fix build on powerpc64le, powerpc64 with CPUTYPE=power6 and newer with Clang 2021-01-27 13:16:16 +00:00
checkmol - lang/fpc revert way like linker is taken by fpc compiler 2021-01-14 21:11:15 +00:00
chemical-mime-data Prefer graphics/ligvrsvg2-rust over graphics/librsvg2 2020-11-09 17:08:12 +00:00
chemps2 science/chemps2: Update 1.8.9 -> 1.8.10 2021-02-01 09:53:54 +00:00
chemtool science/chemtool: Update dependency transfig:print/transfig -> fig2dev:print/fig2dev 2020-10-18 17:53:03 +00:00
chemtool-devel Mark BROKEN in 13/14 (via latest llvm update). 2021-02-18 03:32:16 +00:00
chrono science/chrono: Update 5.0.1 -> 6.0.0 2021-02-12 11:13:40 +00:00
clhep Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
clipper Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
code_saturne PyQt5: Update PyQt5 to 5.15.3, QScintilla2 to 2.12.0, py-qtbuilder to 1.9.0 2021-03-08 06:49:17 +00:00
colt Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
conduit science/conduit: Update 0.6.0 -> 0.7.1 2021-02-12 20:49:39 +00:00
coordgenlibs science/coordgenlibs: Update 1.4.1 -> 1.4.2 2020-10-14 08:11:18 +00:00
cp2k Update GCC_DEFAULT from 9 to 10. 2021-01-13 23:03:31 +00:00
cp2k-data science/cp2k-data: Update 6.1.0 -> 7.1.0 2020-05-25 04:00:02 +00:00
crf++ Clean up some things 2020-09-24 08:50:25 +00:00
dakota science/dakota: Fix build on i386 2021-03-01 17:55:16 +00:00
dalton science/dalton: Update 2018.2 -> 2020.0 2020-11-16 02:14:25 +00:00
dcl Mark these ports as BROKEN: fail to fetch from mastersite. 2021-02-19 14:27:49 +00:00
devisor Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
dftbplus Add workaround for new failure with Fortran GCC 10 frontend: 2020-11-17 22:28:16 +00:00
dkh Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
dlib-cpp science/dlib-cpp: fix build on powerpc64le 2021-01-11 14:07:58 +00:00
drawxtl Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
dvc scipy 1.5.4 is only compatible with python 3.6+ 2020-12-24 09:03:39 +00:00
eccodes Update to 2.20.0 2021-01-30 12:21:28 +00:00
elk science/elk: Not broken any more. 2021-01-05 07:42:49 +00:00
elmerfem Update GCC_DEFAULT from 9 to 10. 2021-01-13 23:03:31 +00:00
epte science/epte: fix build on recent current 2020-08-28 20:59:08 +00:00
erd Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
ergo Some days it does not pay to get out of bed. 2020-05-15 04:25:56 +00:00
erkale math/armadillo: Update to 10.1.1 2020-10-29 22:30:44 +00:00
erkale-pseudopotentials science/erkale-pseudopotentials: Update g20190114 -> g20200426 2020-05-07 00:32:03 +00:00
fastcap Mark ports that are BROKEN due to sbrk on aarch64, also BROKEN on riscv64 2021-01-01 23:51:48 +00:00
fasthenry Mark ports that are BROKEN due to sbrk on aarch64, also BROKEN on riscv64 2021-01-01 23:51:48 +00:00
fastjet science/fastjet: Enable plugins; Fix the config program 2020-05-26 17:10:15 +00:00
fisicalab Update a few GNUstep ports: 2021-02-14 23:21:02 +00:00
fsom Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
fvcom Bump PORTREVISION for science/netcdf-fortran shlib change 2019-08-31 17:11:57 +00:00
fvcom-mpi - Update net/openmpi to 4.0.3 (openmpi 1 is deprecated) 2020-04-19 09:49:02 +00:00
gabedit science/gabedit: Update 2.5.1-061218 -> 2.5.1-300720; Fix build on 13 2020-09-20 22:12:22 +00:00
gamess-us Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
gchemutils science/openbabel: Upgrade 2.4.1 -> 3.1.1 2021-01-13 00:31:38 +00:00
gdma Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
getdp Fix r561520 2021-01-26 17:56:08 +00:00
ghemical science/ghemical: Not compatible with the upcoming OpenBabel-3 => disable this internal option 2020-05-10 21:40:08 +00:00
ghmm print, science: Add missing USES=gnome 2019-11-08 13:22:59 +00:00
gnudatalanguage Bump PORTREVISION for science/netcdf shlib change 2021-01-26 14:04:01 +00:00
gpaw-setups
gramps Prefer graphics/ligvrsvg2-rust over graphics/librsvg2 2020-11-09 17:08:12 +00:00
grib_api Bump PORTREVISION for science/netcdf shlib change 2021-01-26 14:04:01 +00:00
gromacs science/gromacs: Update 2021 -> 2021.1 2021-03-09 05:11:28 +00:00
gsmc print, science: Add missing USES=gnome 2019-11-08 13:22:59 +00:00
gtamsanalyzer Update a few GNUstep ports: 2021-02-14 23:21:02 +00:00
h5utils Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
h5z-zfp
harminv Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
hdf Add workaround for Fortran frontend to GCC 10. 2020-11-17 22:21:03 +00:00
hdf5 Revert r529778, ports depending on it were not tested 2020-03-29 20:41:45 +00:00
hdf5-18 Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
healpix Bump PORTREVISION for astro/cfitsio shlib change 2021-01-26 14:00:17 +00:00
hepmc3 science/hepmc3: Update 3.2.2 -> 3.2.3 2020-12-17 04:23:50 +00:00
highfive science/highfive: Update 2.2.1 -> 2.2.2 2020-08-03 03:29:56 +00:00
hypre science/hypre: Update 2.19.0 -> 2.20.0 2020-09-25 19:01:00 +00:00
iboview Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
InsightToolkit - Upgrade math/eigen3 to 3.3.8; 2020-12-12 17:04:37 +00:00
isaac-cfd science/isaac-cfd: Unbreak build with GCC 10 2020-07-04 08:00:41 +00:00
jdftx science/jdftx: Update 1.5.0 -> 1.6.0 2020-06-15 20:29:51 +00:00
jmol science/jmol: Update 14.31.29 -> 14.31.34 2021-03-07 22:07:25 +00:00
jstrack Update to version 3.4.0, which includes updated documentation, links to 2019-10-02 16:14:46 +00:00
kalzium Update KDE Release-Service releases to 20.12.3 2021-03-04 19:19:10 +00:00
kim-api science/kim-api: Update 2.2.0 -> 2.2.1 2020-12-14 05:31:14 +00:00
kst2 science/kst2: 2021-02-23 15:46:37 +00:00
lammps science/lammps: Update 24Dec2020 -> 10Feb2021 2021-02-18 05:38:11 +00:00
lamprop science/lamprop: 2021-01-06 16:06:28 +00:00
latte Do not include bsd.port.mk twice 2020-12-08 09:30:36 +00:00
libaec Use upstream release tarball 2021-02-06 20:44:01 +00:00
libccp4 Add education virtual category 2020-11-20 07:16:06 +00:00
libcint science/libcint: Update 4.0.6 -> 4.0.7 2020-12-20 01:00:36 +00:00
libctl science/libctl: Update to 4.5.0 2020-10-31 15:59:08 +00:00
libecpint New port: science/libecpint: Library for the evaluation of integrals over effective core potentials 2021-02-24 07:39:06 +00:00
libefp
libgeodecomp Modify cad/scotch to support int64. 2020-12-09 19:29:19 +00:00
libghemical Pet portlint (trailing whitespace). 2019-11-08 03:23:25 +00:00
libgridxc Fix r561520 2021-01-26 17:56:12 +00:00
libint
libint2 science/libint2: Update 2.5.0-beta.2-20 -> 2.6.0 2020-01-13 02:54:47 +00:00
libkml Convert REINPLACE_CMD to patch files 2020-05-08 20:50:41 +00:00
liblinear Update to 2.43 2021-03-07 22:11:50 +00:00
libmsym
liboglappth Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
libquantum
libssm Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
libsvm Convert to UCL & cleanup pkg-message (categories s) 2019-08-14 12:16:12 +00:00
libsvm-python
libvdwxc
libxc science/libxc: remove patch 2020-05-02 20:20:28 +00:00
liggghts science/liggghts: Remove the unnecessary VTK_DIR 2020-04-27 16:26:42 +00:00
luscus science/openbabel: Upgrade 2.4.1 -> 3.1.1 2021-01-13 00:31:38 +00:00
madness science/madness: Make TBB dependency optional, OFF by default until the upstream fixes oneTBB support 2021-01-15 18:35:59 +00:00
maeparser science/maeparser: Update 1.2.3 -> 1.2.4 2020-10-14 08:15:26 +00:00
massxpert Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6). 2020-05-28 08:43:29 +00:00
mbdyn Add workaround for new failure with Fortran GCC 10 frontend: 2020-11-17 22:36:02 +00:00
mcstas
mcstas-comps Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
mcxtrace
mcxtrace-comps
mdynamix Do not include bsd.port.mk twice 2021-02-01 19:54:12 +00:00
medit Unbreak medit. 2019-11-20 20:40:53 +00:00
metaphysicl science/metaphysicl: 0.5.2 -> 0.6.0 2019-10-13 21:17:17 +00:00
minc2 Mark BROKEN in 13/14 (via latest llvm update). 2021-02-18 03:08:19 +00:00
mmdb2 science/mmdb2: Update 2.0.19 -> 2.0.20 2020-01-13 03:30:45 +00:00
mmtf-cpp Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
mol2ps - lang/fpc revert way like linker is taken by fpc compiler 2021-01-14 21:11:15 +00:00
molgif Bump PORTREVISION after r517743 to force relinking. 2019-11-16 12:52:39 +00:00
molscript Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
molsketch science/openbabel: Upgrade 2.4.1 -> 3.1.1 2021-01-13 00:31:38 +00:00
mpb science/mpb: Update to 1.11.1 2020-10-31 16:00:18 +00:00
mpqc devel/doxygen: Update to 1.9.0 2021-01-08 07:47:02 +00:00
msms
multiwfn Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
namd Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
nest science/nest: Update 2.20.0 -> 2.20.1 2020-12-06 09:22:22 +00:00
netcdf science/netcdf: move byteswap4 and byteswap8 fuctions higher so that they are declared when necessary 2021-02-15 16:31:32 +00:00
netcdf-cxx Bump PORTREVISION for science/netcdf shlib change 2021-01-26 14:04:01 +00:00
netcdf-fortran Update to 4.5.3 2021-01-26 14:04:11 +00:00
nifticlib
nwchem science/nwchem: Update 7.0.1 -> 7.0.2 2020-10-15 06:41:02 +00:00
nwchem-data science/nwchem-data: Update 7.0.1 -> 7.0.2 2020-10-14 08:19:21 +00:00
octopus science/octopus: Update 10.1 -> 10.3 2021-01-12 07:49:47 +00:00
openbabel science/openbabel: Fix pkg-plist issues with non-default Python versions 2021-03-02 14:30:06 +00:00
openkim Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
openkim-models science/openkim-model: Update 2019-07-25 -> 2021-01-28 2021-01-29 18:27:12 +00:00
opensim-core Move devel/swig30 to devel/swig and update to 4.0.1 2020-06-17 18:17:45 +00:00
opensph - Upgrade math/eigen3 to 3.3.8; 2020-12-12 17:04:37 +00:00
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements Update to 1.074 2021-01-26 17:54:46 +00:00
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR Update to 1.38 2020-07-24 07:10:54 +00:00
p5-Geo-Coordinates-Converter Add NO_ARCH 2020-04-21 19:47:40 +00:00
p5-Geo-Coordinates-Converter-iArea Cosmetic change 2020-04-21 19:37:40 +00:00
p5-Geo-WebService-Elevation-USGS Update to 0.118 2021-01-26 17:54:51 +00:00
p5-Mcstas-Tools Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
p5-PerlMol
p5-Physics-Unit
packmol science/packmol: Pack molecules in defined regions of space 2019-09-22 19:06:43 +00:00
pagmo2 science/pagmo2: Update 2.16.1 -> 2.17.0 2021-03-06 18:09:59 +00:00
paje Update a few GNUstep ports: 2021-02-14 23:21:02 +00:00
pcmsolver science/pcmsolver: Update 1.2.3 -> 1.3.0 2020-12-03 10:49:31 +00:00
PETSc Rescue PETSc by upgrading to 3.14.1, and thus switch to Python 3.x. 2020-12-16 16:19:30 +00:00
plumed science/plumed: Update 2.6.2 -> 2.7.0 2021-01-03 06:32:47 +00:00
pnetcdf Simplify Makefile 2021-03-07 22:11:56 +00:00
pulseview science/pulseview: prepare for Qt5-5.15 2020-05-30 10:09:51 +00:00
py-abipy Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+ 2021-01-30 13:29:58 +00:00
py-access Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+ 2021-01-30 13:29:58 +00:00
py-asdf Update to 2.7.3 2021-03-07 22:21:52 +00:00
py-ase science/py-ase: Update 3.21.0 -> 3.21.1 2021-01-29 16:38:20 +00:00
py-avogadrolibs Mark BROKEN 2020-12-25 09:16:26 +00:00
py-cdo Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-chainer Bump PORTREVISION for devel/protobuf shlib change 2021-01-26 14:01:09 +00:00
py-chainer-chemistry Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+ 2021-01-30 13:29:58 +00:00
py-chempy science/py-chempy: Update 0.7.12 -> 0.8.1 2020-12-06 22:32:36 +00:00
py-coards Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-DendroPy Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-dipy science/py-dipy: Fix pkg-plist issues with non-default Python versions 2021-03-02 14:31:23 +00:00
py-dlib science/py-dlib: fix build on powerpc64le 2021-01-25 12:59:42 +00:00
py-eccodes Convert to test framework 2021-02-06 20:47:09 +00:00
py-esda Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+ 2021-01-30 13:29:58 +00:00
py-geolinks Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-geomet Update to 0.3.0 2021-01-30 12:25:36 +00:00
py-geometer Update to 0.2.3 2020-07-09 18:09:16 +00:00
py-geometric Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-gpaw science/py-gpaw: Update 20.10.0 -> 21.1.0 2021-02-15 05:08:17 +00:00
py-GPy scipy 1.5.4 is only compatible with python 3.6+ 2020-12-24 09:03:39 +00:00
py-GPyOpt scipy 1.5.4 is only compatible with python 3.6+ 2020-12-24 09:03:39 +00:00
py-gsd Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-h5json Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-h5py Update to 3.1.0 2021-01-26 17:37:37 +00:00
py-inequality Add py-inequality 1.0.0 2021-01-03 19:58:04 +00:00
py-jupyter_jsmol Upgrade to v0.2.6. 2021-01-29 18:37:56 +00:00
py-kim-query Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-kinematics Remove py-pytest-runner from BUILD_DEPENDS 2021-01-10 23:14:07 +00:00
py-kliff science/py-kliff: Update 0.1.7 -> 0.2.0 2021-02-16 00:31:47 +00:00
py-liac-arff Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-libpysal Update to 4.4.0 2021-02-03 19:49:19 +00:00
py-lifelines Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+ 2021-01-30 13:29:58 +00:00
py-MDAnalysis Unbreak bulk -a 2020-06-13 15:05:44 +00:00
py-MDAnalysisTests Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+ 2021-01-30 13:29:58 +00:00
py-mdp Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-mmtf-python Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-molmod Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-moltemplate science/py-moltemplate: Update 2.19.5 -> 2.19.6 2021-02-19 09:50:39 +00:00
py-netCDF4 Bump PORTREVISION for science/netcdf shlib change 2021-01-26 14:04:01 +00:00
py-netcdf-flattener Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-nibabel New port: science/py-nibabel: Read/write some common neuroimaging file formats 2021-01-21 02:07:06 +00:00
py-nilearn Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+ 2021-01-30 13:37:02 +00:00
py-obspy Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-oddt Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+ 2021-01-30 13:29:58 +00:00
py-OpenFermion Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-openpiv science/py-openpiv: update to 0.23.4 2021-01-27 06:26:23 +00:00
py-paida Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-paramz scipy 1.5.4 is only compatible with python 3.6+ 2020-12-24 09:03:39 +00:00
py-phono3py Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-phonopy science/py-phonopy: Update 2.9.0 -> 2.9.1 2021-01-30 10:43:11 +00:00
py-pupynere Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-pyaixi Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-pycsw Update to 2.6.0 2020-12-19 20:10:44 +00:00
py-pydicom - Update to 2.1.2 2020-12-12 00:54:58 +00:00
py-PyFR science/py-PyFR: Update 1.9.0 -> 1.10.0 2020-05-29 05:48:10 +00:00
py-pygeodesy Update to 21.1.21 2021-01-30 12:25:47 +00:00
py-pygeometa Update to 0.6.0 2021-01-26 17:37:42 +00:00
py-pygmo2 science/pagmo2: Update 2.16.1 -> 2.17.0 2021-03-06 18:09:59 +00:00
py-pymatgen science/py-pymatgen: Update 2022.0.3 -> 2022.0.4 2021-03-10 05:36:22 +00:00
py-pymol Bump PORTREVISION for science/netcdf shlib change 2021-01-26 14:04:01 +00:00
py-pyosf Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-pysal Update to 2.3.0 2021-02-01 19:35:52 +00:00
py-pyteomics Update to 4.4.1 2021-01-26 17:37:47 +00:00
py-qcelemental science/py-qcelemental: Update 0.18.0 -> 0.19.0 2021-03-05 04:19:57 +00:00
py-qcengine science/py-qcengine: Update 0.17.0 -> 0.18.0 2021-02-28 19:13:43 +00:00
py-qspin scipy 1.5.4 is only compatible with python 3.6+ 2020-12-24 09:03:39 +00:00
py-quantities Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-rmf Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-rmsd scipy 1.5.4 is only compatible with python 3.6+ 2020-12-24 09:03:39 +00:00
py-ruffus Drop python 2.7 support from a few ports 2020-12-28 23:02:12 +00:00
py-scikit-fuzzy Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-scikit-learn - Update WWW 2020-06-17 09:35:01 +00:00
py-scikit-optimize Update to 0.8.1 2020-09-06 15:37:09 +00:00
py-scikit-sparse Relax hardcoded paths to fix build with Python 3.8.7 2020-12-24 13:46:01 +00:00
py-scimath Unbreak bulk -a 2020-10-20 07:02:56 +00:00
py-scipy science/py-scipy: Update 1.5.4 -> 1.6.0 2021-01-23 05:37:12 +00:00
py-scoria scipy 1.5.4 is only compatible with python 3.6+ 2020-12-24 09:03:39 +00:00
py-segregation Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+ 2021-01-30 13:29:58 +00:00
py-segyio science/py-segyio: Update 1.9.5 -> 1.9.6 2021-02-22 05:47:56 +00:00
py-SimpleSpectral Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
py-spaghetti Update to 1.5.6 2021-02-03 19:49:25 +00:00
py-spglib science/py-spglib: Update 1.16.0 -> 1.16.1 2021-02-01 04:28:32 +00:00
py-tensorflow Bump PORTREVISION for devel/grpc shlib change 2021-03-07 22:10:47 +00:00
py-tobler Update to 0.7.0 2021-02-03 19:49:32 +00:00
py-veusz PyQt5: Update PyQt5 to 5.15.3, QScintilla2 to 2.12.0, py-qtbuilder to 1.9.0 2021-03-08 06:49:17 +00:00
pybrain scipy 1.5.4 is only compatible with python 3.6+ 2020-12-24 09:03:39 +00:00
pynn - Update to 0.9.6 2020-12-31 08:19:47 +00:00
qbox science/qbox: Remove unnecessary gcc link flags because the project builds with clang 2021-03-07 03:43:39 +00:00
qcl
qiskit-aer devel/libfmt: Update to 7.0.3 2020-09-07 21:19:41 +00:00
qmcpack science/qmcpack: Update 3.9.2 -> 3.10.0 2020-11-13 05:10:06 +00:00
quantum-espresso science/quantum-espresso: Update 6.6 -> 6.7.0 2020-12-03 20:51:28 +00:00
quantum-espresso-pseudopotentials Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
qwalk Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
R-cran-AMORE math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-bayesm math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-cmprsk - Update to 2.2-10 2020-06-14 12:16:54 +00:00
R-cran-DCluster math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-e1071 - Update to 1.7-4 2020-10-17 14:19:29 +00:00
R-cran-eco math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-Epi - Update to 2.44 2021-03-01 09:47:55 +00:00
R-cran-epicalc math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-etm - Update to 1.1.1 2020-09-09 08:59:47 +00:00
R-cran-FAdist math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-fastICA math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-kernlab math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-snow math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-som math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-udunits2 math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
rdkit science/rdkit: Add PGSQL option to build the PostgreSQL cartridge 2021-03-08 17:29:24 +00:00
rmf Fix build with hdf5 1.10.6 2020-01-01 16:31:57 +00:00
rubygem-ai4r
rubygem-cdo Update to 1.5.1 2020-05-16 11:04:45 +00:00
rubygem-rgeo Update to 2.2.0 2020-11-21 09:43:54 +00:00
rubygem-rgeo-geojson Cosmetic change 2019-11-03 17:23:27 +00:00
rubygem-rgeo-proj4 graphics/proj: Update to 7.2.0 2020-11-18 05:27:28 +00:00
rubygem-rgeo-shapefile Update to 3.0.0 2020-09-05 21:35:09 +00:00
rubygem-ruby-dcl Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
rubygem-ruby-netcdf Bump PORTREVISION for science/netcdf shlib change 2021-01-26 14:04:01 +00:00
scidavis Update Qt/PySide2 to 5.15.2 / PyQt to 5.15.1 / SIP to 5.4.0 2020-12-08 20:03:07 +00:00
segyio science/segyio: Update 1.9.5 -> 1.9.6 2021-02-22 05:47:15 +00:00
shelxle science/shelxle: Update 1.0.1226 -> 1.0.1229 2021-02-27 17:36:43 +00:00
siesta Add workaround for new failure with Fortran GCC 10 frontend: 2020-11-17 22:40:45 +00:00
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw science/sigrok-firmware-fx2lafw: Update to version 0.1.7 2019-11-15 20:39:58 +00:00
sigrok-firmware-utils
silo science/silo: Backport of patches from Debian to support Python 3 2020-09-27 11:32:55 +00:00
simbody Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
simgrid science/simgrid: Update 3.25 -> 3.26 2021-01-04 22:59:09 +00:00
simint
simlib For ports on riscv64 that fail the same (or similar ways) to aarch64, mark 2021-01-02 01:46:08 +00:00
simsmith Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6). 2020-05-28 08:43:29 +00:00
smoldyn science/smoldyn: Update 2.62 -> 2.63 2020-12-20 06:45:09 +00:00
sparta science/sparta: Update 6Jul2020 -> 26Feb2021 2021-02-26 20:47:59 +00:00
spglib science/spglib: Update 1.16.0 -> 1.16.1 2021-02-14 04:51:30 +00:00
step Update KDE Release-Service releases to 20.12.3 2021-03-04 19:19:10 +00:00
svmlight
szip
teem
tfel Preparing for Python 3.8 (do not hardcode -37). 2021-02-28 21:04:59 +00:00
tfel-edf - Chase gfortran10 and do not force Gcc any more; 2021-01-24 11:19:08 +00:00
thermofun science/thermofun: Update 0.3.6 -> 0.3.7 2021-03-09 21:07:52 +00:00
tinker science/tinker: Update 8.8.1 -> 8.8.3 2020-11-10 22:54:52 +00:00
udunits Update to 2.2.28 2021-01-03 20:05:21 +00:00
v_sim Fix PLIST with hardcoded python version 2021-03-07 22:33:33 +00:00
vipster science/vipster: Update 1.18b.20200514 -> 1.19.1b-14 2020-12-22 11:06:15 +00:00
vmd Bump PORTREVISION for science/netcdf shlib change 2021-01-26 14:04:01 +00:00
voro++
votca science/votca: Update 1.6.2 -> 1.6.3 2020-12-18 05:40:58 +00:00
wannier90 science/wannier90: Rename the shared library libwannier90.so -> libwannier.so to match the static library name that it creates 2021-01-02 00:39:14 +00:00
wwplot science/wwplot: Update 0.0.7 -> 0.0.8 2020-01-25 17:53:30 +00:00
wxmacmolplt x11-toolkits/wxgtk30: Update to 3.0.5.1 2020-05-17 05:55:12 +00:00
xcrysden science/cgnslib: rename unitconv to unitconv.sh, thus avoiding the conflict with 2020-12-26 11:48:36 +00:00
xdrawchem science/xdrawchem: 1.10.2-1 -> 1.11.0-2 2021-01-13 00:52:20 +00:00
xtb science/xtb: update to 6.3.3 2020-09-20 21:19:02 +00:00
yoda science/yoda: Update 1.8.4 -> 1.8.5 2020-12-06 20:30:15 +00:00
Makefile New port: science/libecpint: Library for the evaluation of integrals over effective core potentials 2021-02-24 07:39:06 +00:00