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10570c91c8
This patch brings EMBOSS up to date with the current version. i. The patches included in files/ are bugfixes for files in EMBOSS-3.0.0 that appeared after the release. They are documented in ftp://emboss.open-bio.org/pub/EMBOSS/fixes/README This is just 'for the record' so that we remember to remove these patches in the next update. ii. EMBOSS is now installed by default in LOCALBASE/emboss This is to avoid CONFLICTS with other ports that install files with the same names. Installing EMBOSS to another PREFIX is also possible. iii. now EMBASSY and EMBOSS both store their distfiles in the same DIST_SUBDIR iv. use built-in PKGMESSAGE and SUB_FILES instead of doing it the old (manual) way For EMBASSY: This update brings embassy in sync with the update of EMBOSS to 3.0.0. Things that changed from previous version of the port: i. embassy now installs by default in $LOCALBASE/emboss (the new default PREFIX for emboss as well). ii. changed DIST_SUBDIR so that all the distfiles are put together with emboss. This makes sense(TM) iii. incorporated new EMBASSY apps (this accounts for the changes in OPTIONS and pkg-plist) iv. removed obsoleted patches Finally, I included a sample text that could go in UPDATING. PR: 93053 Submitted by: Fernan Aguero <fernan (at) iib.unsam.edu.ar> (maintainer)
21 lines
866 B
Plaintext
21 lines
866 B
Plaintext
--- emboss/emboss.default.template.orig Wed Feb 8 00:43:42 2006
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+++ emboss/emboss.default.template Wed Feb 8 00:40:34 2006
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@@ -4,7 +4,7 @@
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# By default this is /usr/local/share/EMBOSS/test but the directory can
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# be changed with --prefix when you configure EMBOSS.
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-# SET emboss_tempdata path_to_directory_$EMBOSS/test
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+# SET emboss_tempdata %%DATADIR%%/test
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# Proxy - set this if any databases are accessed through a proxy web server.
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# Turn off in the DB definition with proxy: ":" for any
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@@ -15,7 +15,7 @@
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# Logfile - set this to a file that any user can append to
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# and EMBOSS applications will automatically write log information
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-# SET emboss_logfile /packages/emboss/emboss/log
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+# SET emboss_logfile /var/log/emboss.log
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# Pagesize - this is the size of disc page blocks and is
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# required by the 'dbx' indexing programs and 'method: emboss'
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