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702ce22305
sequences. It stands for Sequence Search and Alignment by Hashing Algorithm. It achieves its fast search speed by converting sequence information into a `hash table' data structure, which can then be searched very rapidly for matches. WWW: http://www.sanger.ac.uk/Software/analysis/SSAHA/ PR: ports/124525 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: gabor (mentor, implicit)
29 lines
1.0 KiB
C++
29 lines
1.0 KiB
C++
--- ./SequenceReader/SequenceReaderLocal.cpp.orig 2004-03-01 13:51:30.000000000 -0300
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+++ ./SequenceReader/SequenceReaderLocal.cpp 2008-06-12 15:39:31.000000000 -0300
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@@ -46,10 +46,10 @@
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// and seqNames_
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SequenceReaderLocal::SequenceReaderLocal
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( SequenceReader& seqFile, int wordLength, ostream& monitoringStream ) :
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-sourceData_( seqFile.getSourceDataType() ),
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+SequenceReader( monitoringStream ),
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wordLength_( wordLength ),
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bitsPerSymbol_( seqFile.getBitsPerSymbol() ),
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-SequenceReader( monitoringStream )
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+sourceData_( seqFile.getSourceDataType() )
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{
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monitoringStream_
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<< "constructing SequenceReaderLocal from SequenceReader" << endl;
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@@ -72,10 +72,10 @@
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SequenceReaderLocal::SequenceReaderLocal
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( int wordLength, int bitsPerSymbol, ostream& monitoringStream ) :
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-sourceData_( gUnknownData ),
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+SequenceReader( monitoringStream ),
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wordLength_( wordLength ),
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bitsPerSymbol_( bitsPerSymbol ),
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-SequenceReader( monitoringStream )
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+sourceData_( gUnknownData )
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{
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monitoringStream_
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<< "constructing empty SequenceReaderLocal" << endl;
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