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47 lines
1.3 KiB
Makefile
47 lines
1.3 KiB
Makefile
# Created by: barnhart@genetics.wustl.edu
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# $FreeBSD$
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PORTNAME= hmmer
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PORTVERSION= 3.0
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CATEGORIES= biology
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MASTER_SITES= ftp://selab.janelia.org/pub/software/hmmer3/3.0/ \
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http://selab.janelia.org/software/hmmer3/3.0/
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MAINTAINER= ports@FreeBSD.org
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COMMENT= Profile hidden Markov models for biological sequence analysis
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GNU_CONFIGURE= yes
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USES= perl5
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CONFIGURE_ARGS+=--enable-threads --enable-lfs
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DOCFILES= COPYRIGHT INSTALL LICENSE Userguide.pdf
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EXAMPLES= 7LESS_DROME Pkinase.sto fn3.sto globins4.sto minifam.h3f minifam.h3p \
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HBB_HUMAN fn3.hmm globins4.hmm globins45.fa minifam.h3i \
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Pkinase.hmm fn3.out globins4.out minifam minifam.h3m
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#MAN1= hmmalign.1 hmmbuild.1 hmmcalibrate.1 hmmconvert.1 hmmemit.1 \
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# hmmer.1 hmmfetch.1 hmmindex.1 hmmpfam.1 hmmsearch.1
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OPTIONS_DEFINE= PVM
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PVM_DESC= PVM support
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.include <bsd.port.options.mk>
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.if ${PORT_OPTIONS:MPVM}
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CONFIGURE_ENV+= PVM_ROOT="${LOCALBASE}/lib/pvm" PVM_ARCH="FREEBSD"
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CONFIGURE_ARGS+= --with-pvm
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BUILD_DEPENDS+= pvm:${PORTSDIR}/net/pvm
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.endif
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post-install:
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.if ${PORT_OPTIONS:MDOCS}
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@${MKDIR} ${STAGEDIR}${DOCSDIR}
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${INSTALL_DATA} ${DOCFILES:S,^,${WRKSRC}/,} ${STAGEDIR}${DOCSDIR}
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.endif
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.if ${PORT_OPTIONS:MEXAMPLES}
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@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
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${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/tutorial/,} ${STAGEDIR}${EXAMPLESDIR}
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.endif
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.include <bsd.port.mk>
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