mirror of
https://git.FreeBSD.org/ports.git
synced 2024-12-18 03:46:03 +00:00
ee6e0c4336
A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers quickly by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. WWW: http://www.genome.umd.edu/jellyfish.html PR: 207929 Submitted by: bacon4000@gmail.com
8 lines
425 B
Plaintext
8 lines
425 B
Plaintext
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
|
|
A k-mer is a substring of length k, and counting the occurrences of all such
|
|
substrings is a central step in many analyses of DNA sequence. JELLYFISH can
|
|
count k-mers quickly by using an efficient encoding of a hash table and by
|
|
exploiting the "compare-and-swap" CPU instruction to increase parallelism.
|
|
|
|
WWW: http://www.genome.umd.edu/jellyfish.html
|