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freebsd-ports/math/sage/Makefile
Yuri Victorovich d28495c0ce math/arb: Update 2.19.0 -> 2.20.0
2021-07-25 11:47:02 -07:00

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# Created by: Stephen Montgomery-Smith <stephen@FreeBSD.org>
PORTNAME= sage
PORTVERSION= 9.2
PORTREVISION= 18
CATEGORIES= math
MASTER_SITES= https://mirrors.xmission.com/sage/src/ \
http://mirrors.xmission.com/sage/src/ \
https://www-ftp.lip6.fr/pub/math/sagemath/src/ \
https://mirrors.mit.edu/sage/src/ \
https://files.sagemath.org/src/ \
ftp://www-ftp.lip6.fr/pub/math/sagemath/src/
#MASTER_SITES= ftp://www-ftp.lip6.fr/pub/math/sagemath/devel/
PKGNAMESUFFIX= -math
MAINTAINER= thierry@FreeBSD.org
COMMENT= Open source Mathematics software
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/COPYING.txt
BUILD_DEPENDS= bash:shells/bash \
dash:shells/dash \
cmake:devel/cmake \
dreadnaut:math/nauty \
${PYTHON_PKGNAMEPREFIX}alabaster>0:textproc/py-alabaster@${PY_FLAVOR}\
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${PYTHON_PKGNAMEPREFIX}bleach>0:www/py-bleach@${PY_FLAVOR}\
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${PYTHON_PKGNAMEPREFIX}ipython>0:devel/ipython@${PY_FLAVOR}\
${PYTHON_PKGNAMEPREFIX}ipython_genutils>0:devel/py-ipython_genutils@${PY_FLAVOR}\
${PYTHON_PKGNAMEPREFIX}ipywidgets>0:devel/py-ipywidgets@${PY_FLAVOR}\
${PYTHON_PKGNAMEPREFIX}itsdangerous>0:security/py-itsdangerous@${PY_FLAVOR}\
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${PYTHON_PKGNAMEPREFIX}jedi>0:devel/py-jedi@${PY_FLAVOR}\
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${PYTHON_PKGNAMEPREFIX}nose>0:devel/py-nose@${PY_FLAVOR}\
${PYTHON_PKGNAMEPREFIX}notebook>0:www/py-notebook@${PY_FLAVOR}\
${PYNUMPY} \
${PYTHON_PKGNAMEPREFIX}packaging>0:devel/py-packaging@${PY_FLAVOR}\
${PYTHON_PKGNAMEPREFIX}pandocfilters>0:textproc/py-pandocfilters@${PY_FLAVOR}\
${PYTHON_PKGNAMEPREFIX}parso>0:textproc/py-parso@${PY_FLAVOR}\
${PYTHON_PKGNAMEPREFIX}path.py>0:devel/py-path.py@${PY_FLAVOR}\
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${PY_PILLOW} \
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fflas-ffpack-config:math/fflas-ffpack \
fricas>0:math/fricas \
gfan:math/gfan \
git:devel/git \
gp2c:math/gp2c \
jmol:science/jmol \
libatomic_ops>0:devel/libatomic_ops \
MathJax>0:www/mathjax \
maxima>0:math/maxima \
p5-XML-Writer>0:textproc/p5-XML-Writer \
p5-XML-LibXML>0:textproc/p5-XML-LibXML \
p5-XML-LibXSLT>0:textproc/p5-XML-LibXSLT\
p5-File-Slurp>0:devel/p5-File-Slurp \
p5-JSON>0:converters/p5-JSON \
p5-SVG>0:textproc/p5-SVG \
p5-MongoDB>0:databases/p5-MongoDB \
p5-Term-ReadLine-Gnu>0:devel/p5-Term-ReadLine-Gnu\
palp>0:math/palp \
pandoc:textproc/hs-pandoc \
pari-elldata>0:math/pari_elldata\
pari-galdata>0:math/pari_galdata\
pari-galpol>0:math/pari_galpol \
pari-nftables>0:math/pari_nftables \
pari-seadata>0:math/pari_seadata\
QuadraticSieve:math/flintqs \
gpatch:devel/patch \
rubiks>0:math/rubiks \
sympow:math/sympow \
tachyon:graphics/tachyon \
three.js>0:www/threejs \
yasm:devel/yasm \
gtar:archivers/gtar \
convert:graphics/ImageMagick6 \
ffmpeg:multimedia/ffmpeg \
${LOCALBASE}/lib/libBLT.a:x11-toolkits/blt
LIB_DEPENDS= libarb.so:math/arb \
libboost_thread.so:devel/boost-libs \
libbraiding.so:math/libbraiding \
libbrial.so:math/brial \
libCbc.so:math/cbc \
libcdd.so:math/cddlib \
libcliquer.so:math/cliquer \
libcurl.so:ftp/curl \
libeantic.so:math/e-antic \
libec.so:math/eclib \
libecl.so:lang/ecl \
libecm.so:math/gmp-ecm \
libflint.so:math/flint2 \
libfplll.so:math/fplll \
libfreetype.so:print/freetype2 \
libgc.so:devel/boehm-gc \
libgc-threaded.so:devel/boehm-gc-threaded\
libgf2x.so:math/gf2x \
libgivaro.so:math/givaro \
libglpk.so:math/glpk \
libgap.so:math/gap \
libgmp.so:math/gmp \
libgsl.so:math/gsl \
libhomfly.so:math/libhomfly \
libiml.so:math/iml \
libisl.so:devel/isl \
libLfunction.so:math/lcalc \
libffi.so:devel/libffi \
libgd.so:graphics/gd \
libgiac.so:math/giacxcas \
liblinbox.so:math/linbox \
liblrcalc.so:math/lrcalc \
liblrs.so:math/lrslib \
libm4ri.so:math/m4ri \
libm4rie.so:math/m4rie \
libmpc.so:math/mpc \
libmpfi.so:math/mpfi \
libmpfr.so:math/mpfr \
libmpir.so:math/mpir \
libntl.so:math/ntl \
libpari.so:math/pari \
libpcre.so:devel/pcre \
libplanarity.so:math/planarity \
libpng.so:graphics/png \
libppl.so:devel/ppl \
libpynac.so:math/pynac \
libR.so:math/R \
librw.so:math/rankwidth \
libSingular.so:math/singular \
libumfpack.so:math/suitesparse-umfpack \
libsemigroups.so:math/libsemigroups \
libsymmetrica.so:math/symmetrica\
libzmq.so:net/libzmq4 \
libzn_poly-0.9.so:math/zn_poly \
libqd.so:math/qd \
libisl.so:devel/isl \
libblas.so:math/blas \
libicuuc.so:devel/icu \
libtiff.so:graphics/tiff \
liblapack.so:math/lapack \
libedit.so:devel/libedit \
libwebp.so:graphics/webp \
libpcre2-8.so:devel/pcre2 \
libgdbm.so:databases/gdbm \
liblcms2.so:graphics/lcms2 \
libopenjp2.so:graphics/openjpeg
RUN_DEPENDS= bash:shells/bash \
dreadnaut:math/nauty \
${PYTHON_PKGNAMEPREFIX}alabaster>0:textproc/py-alabaster@${PY_FLAVOR}\
${PYTHON_PKGNAMEPREFIX}attrs>0:devel/py-attrs@${PY_FLAVOR}\
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${PYTHON_PKGNAMEPREFIX}cycler>0:devel/py-cycler@${PY_FLAVOR}\
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${PY_PILLOW} \
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${PYTHON_PKGNAMEPREFIX}zipp>0:devel/py-zipp@${PY_FLAVOR}\
${PYTHON_PKGNAMEPREFIX}zope.interface>0:devel/py-zope.interface@${PY_FLAVOR}\
fflas-ffpack-config:math/fflas-ffpack \
fricas>0:math/fricas \
gfan:math/gfan \
git:devel/git \
gp2c:math/gp2c \
jmol:science/jmol \
MathJax>0:www/mathjax \
maxima>0:math/maxima \
p5-Term-ReadLine-Gnu>0:devel/p5-Term-ReadLine-Gnu\
palp>0:math/palp \
pandoc:textproc/hs-pandoc \
pari-elldata>0:math/pari_elldata\
pari-galdata>0:math/pari_galdata\
pari-galpol>0:math/pari_galpol \
pari-nftables>0:math/pari_nftables \
pari-seadata>0:math/pari_seadata\
QuadraticSieve:math/flintqs \
rubiks>0:math/rubiks \
sympow:math/sympow \
tachyon:graphics/tachyon \
three.js>0:www/threejs \
yasm:devel/yasm \
pixz:archivers/pixz
USES= autoreconf blaslapack:openblas compiler:c++11-lib fortran \
gettext gmake gnome iconv jpeg libtool localbase ncurses \
ninja:build perl5 pkgconfig python:3.7+ readline shebangfix \
sqlite tk xorg
USE_TEX= latex:build pdftex:build tex:build
USE_XORG= x11 xext xscrnsaver
USE_GNOME= cairo glib20 pango
USE_PYTHON= cython
USE_JAVA= yes # for science/jmol
CONFLICTS= ${PYTHON_PKGNAMEPREFIX}wheel-0.*
SHEBANG_FILES= .
SHEBANG_LANG+= dash
dash_OLD_CMD= /bin/dash
dash_CMD= ${LOCALBASE}/bin/dash
DISABLE_BINUTILS= yes
LIBS= -lomp -pthread
.if !defined{WITH_DEBUG}
LDFLAGS+= -s
.endif
BLDDIR= ${WRKDIR}/build
GNU_CONFIGURE= yes
CONFIGURE_ENV= SAGE_PORT=yes CC=${CC} GCC=${CC} CXX=${CXX} AS=${AS} LD=${LD} \
SAGE_LOCAL=${PREFIX} SAGE_DESTDIR=${BLDDIR}/ \
DESTDIR=${BLDDIR}/${PREFIX} PATCH=${LOCALBASE}/bin/gpatch
CONFIGURE_ARGS= --with-system-gcc=force \
--with-system-python3=yes \
--with-python=${PYTHON_CMD} \
--enable-build-as-root \
--disable-download-from-upstream-url \
--localstatedir=/var
MAKE_ENV= MAKE=${GMAKE} DESTDIR=${BLDDIR}
ALL_TARGET= build
REINPLACE_ARGS= -i ''
BINARY_ALIAS= patch=${LOCALBASE}/bin/gpatch
OPTIONS_SUB= yes
PLIST_SUB= VER=${DISTVERSION}
SUB_FILES= pkg-message
OPTIONS_DEFINE= DOCS
PORTDOCS= *
.include <bsd.port.pre.mk>
WSDIR= ${BLDDIR}${PREFIX}
SPKG_INST= configure.ac configure build/sage_bootstrap/uninstall.py \
build/make/install src/bin/sage-env
PY2FIX= bin lib/${PYTHON_VERSION}
DOC2FIX= .pickle .doctree
SE2FIX= ^ECLDIR= ^SINGULAR MAXIMA_PREFIX
SHR2FIX= GAP_ROOT_DIR PPLPY_DOCS SINGULARPATH
STG2FIX= bin/sage-env-config \
share/jupyter/kernels/sagemath/kernel.json
BADLN= kernels/sagemath/doc nbextensions/jsmol \
nbextensions/mathjax nbextensions/threejs
# External dependencies not yet handled by SageMath
# Note: do not use wheel from ports
PY_LIBS= alabaster attrs babel backcall bleach certifi cffi cvxopt cycler \
cypari cysignals cython dateutil decorator defusedxml docutils \
entrypoints fpylll gmpy2 html5lib imagesize importlib_metadata ipykernel ipython \
ipython_genutils ipywidgets itsdangerous jedi jinja2 jsonschema jupyter_client \
jupyter_core kiwisolver markupsafe matplotlib mistune mpmath \
nbconvert nbformat networkx nose notebook numpy packaging pandocfilters \
parso pathpy pexpect pickleshare pillow pkgconfig pplpy \
prometheus_client prompt_toolkit psutil ptyprocess pybind11 pycparser pyparsing \
pygments pyrsistent pytz pyzmq requests rpy2 scandir scipy send2trash simplegeneric \
six snowballstemmer sphinx sphinxcontrib_applehelp sphinxcontrib_devhelp sphinxcontrib_htmlhelp sphinxcontrib_jsmath sphinxcontrib_qthelp sphinxcontrib_serializinghtml sphinxcontrib_websupport sympy terminado testpath tornado traitlets \
tzlocal vcversioner wcwidth webencodings widgetsnbextension zipp zope_interface
JS_LIBS= jmol mathjax threejs
SPKGCM4= e_antic ecl gap libhomfly linbox maxima pynac rubiks singular
post-patch:
${CP} ${FILESDIR}/psutil__arch__bsd__freebsd_socks.c.patch \
${WRKSRC}/build/pkgs/psutil/patches/
.for sp in ${SPKGCM4}
${CP} ${FILESDIR}/${sp}_spkg-configure.m4 \
${WRKSRC}/build/pkgs/${sp}/spkg-configure.m4
.endfor
.for sp in ${PY_LIBS}
${CP} ${FILESDIR}/py_libs_spkg-configure.m4 \
${WRKSRC}/build/pkgs/${sp:C/pari2/pari/}/spkg-configure.m4
.endfor
#.for sp in ${PY_FILES}
# ${SED} -e 's|%%PYTHON_SITELIBDIR%%|${PYTHON_SITELIBDIR}|' ${FILESDIR}/${sp}_spkg-configure.m4.in \
# > ${WRKSRC}/build/pkgs/${sp}/spkg-configure.m4
#.endfor
.for sp in ${JS_LIBS}
${SED} -e 's|%%LOCALBASE%%|${LOCALBASE}|' ${FILESDIR}/${sp}_spkg-configure.m4.in \
> ${WRKSRC}/build/pkgs/${sp}/spkg-configure.m4
.endfor
pre-configure:
${REINPLACE_CMD} -e 's|SAGE_LOCAL="$$prefix"|SAGE_LOCAL="${WSDIR}"|' \
-e 's|lib/pkgconfig|libdata/pkgconfig|' ${WRKSRC}/configure.ac
${REINPLACE_CMD} -e 's|SAGE_LOCAL="@prefix@"|SAGE_LOCAL="${WSDIR}"|' \
${WRKSRC}/src/bin/sage-env-config.in
${REINPLACE_CMD} -e 's|%%CFLAGS%%|${CFLAGS}|;s|%%LDFLAGS%%|${LDFLAGS}|' \
${WRKSRC}/build/pkgs/tachyon/patches/Make-arch.patch
${REINPLACE_CMD} -e '/SUITESPARSE_INC_DIR/s|$${SAGE_LOCAL}/include|${LOCALBASE}/include/suitesparse|'\
${WRKSRC}/build/pkgs/cvxopt/spkg-install.in
${REINPLACE_CMD} -e 's|exec python3|exec ${PYTHON_CMD}|' \
-e 's|exec "$$SAGE_LOCAL"/bin/python3|exec ${PYTHON_CMD}|' \
${WRKSRC}/src/bin/sage
.for f in ${PY_LIBS}
${REINPLACE_CMD} -e 's|python3|${PYTHON_CMD}|;s|py_libs|${f}|' \
${WRKSRC}/build/pkgs/${f}/spkg-configure.m4
.endfor
${REINPLACE_CMD} -e 's|import attrs|import attr|' \
${WRKSRC}/build/pkgs/attrs/spkg-configure.m4
${REINPLACE_CMD} -e 's|import cypari|import cypari2|' \
${WRKSRC}/build/pkgs/cypari/spkg-configure.m4
${REINPLACE_CMD} -e 's|import ipython|import IPython|' \
${WRKSRC}/build/pkgs/ipython/spkg-configure.m4
${REINPLACE_CMD} -e 's|import pathpy|import path|' \
${WRKSRC}/build/pkgs/pathpy/spkg-configure.m4
${REINPLACE_CMD} -e 's|import pillow|import PIL|' \
${WRKSRC}/build/pkgs/pillow/spkg-configure.m4
${REINPLACE_CMD} -e 's|import pplpy|import ppl|' \
${WRKSRC}/build/pkgs/pplpy/spkg-configure.m4
${REINPLACE_CMD} -e 's|import pyzmq|import zmq|' \
${WRKSRC}/build/pkgs/pyzmq/spkg-configure.m4
.for f in applehelp devhelp htmlhelp jsmath qthelp serializinghtml websupport
${REINPLACE_CMD} -e 's|import sphinxcontrib_|import sphinxcontrib.|' \
${WRKSRC}/build/pkgs/sphinxcontrib_${f}/spkg-configure.m4
.endfor
${REINPLACE_CMD} -e 's|import zope_interface|import zope.interface|' \
${WRKSRC}/build/pkgs/zope_interface/spkg-configure.m4
${REINPLACE_CMD} -e '/GAP_ROOT=/s|$$SAGE_LOCAL|${LOCALBASE}|' \
${WRKSRC}/build/pkgs/gap_packages/spkg-install.in
${REINPLACE_CMD} -e "/os.path.join/s|SAGE_LOCAL|'${LOCALBASE}'|"\
${WRKSRC}/src/sage/libs/gap/util.pyx
${REINPLACE_CMD} -e "/os.path.join(SAGE_LOCAL/s|SAGE_LOCAL|'${LOCALBASE}'|" \
${WRKSRC}/src/sage/env.py
${REINPLACE_CMD} -e "/^library_dirs/s|SAGE_LOCAL|'${LOCALBASE}'|" \
${WRKSRC}/src/setup.py
.for f in ${SHR2FIX}
${REINPLACE_CMD} -e "/${f}/s|SAGE_SHARE|'${LOCALBASE}/share/'|" \
${WRKSRC}/src/sage/env.py
.endfor
${REINPLACE_CMD} -e "/JMOL_DIR/s|SAGE_SHARE|'${JAVASHAREDIR}'|" \
-e "/JMOL_DIR/s|jmol|classes|" \
${WRKSRC}/src/sage/env.py
${REINPLACE_CMD} -e "/JSMOL_DIR/s|SAGE_SHARE|'${LOCALBASE}/www'|" \
-e "/JSMOL_DIR/s|jsmol|JSmol|" \
${WRKSRC}/src/sage/env.py
${REINPLACE_CMD} -e "/MATHJAX_DIR/s|SAGE_SHARE|'${LOCALBASE}/www'|" \
-e "/MATHJAX_DIR/s|mathjax|MathJax|" \
${WRKSRC}/src/sage/env.py
${REINPLACE_CMD} -e "/THREEJS_DIR/s|SAGE_SHARE|'${LOCALBASE}/www'|" \
${WRKSRC}/src/sage/env.py
.for f in ${SE2FIX}
${REINPLACE_CMD} -e '/${f}/s|$$SAGE_LOCAL|${LOCALBASE}|' \
${WRKSRC}/src/bin/sage-env
.endfor
${REINPLACE_CMD} -e '/LDFLAGS=/s|-rpath,$$SAGE_LOCAL|-rpath,${LOCALBASE}|' \
${WRKSRC}/src/bin/sage-env
.for f in ${SPKG_INST}
${REINPLACE_CMD} -e 's|/var/lib/sage|/share/libdata/${PORTNAME}|' \
${WRKSRC}/${f}
.endfor
# Bug with py-docutils > 0.16
${RM} -r ${WRKSRC}/src/doc/hu
(cd ${WRKSRC} && ./bootstrap)
${MKDIR} ${BLDDIR}${PREFIX}/lib/pkgconfig # Removed thereafter
post-build:
.if ${PORT_OPTIONS:MDOCS}
(cd ${WRKSRC} && ${MAKE_ENV} ${MAKE_CMD} doc)
.endif
.for d in ${PY2FIX}
${FIND} ${WSDIR}/${d} -type f -exec ${GREP} -I -l "${WSDIR}/bin/python" {} \; |\
${XARGS} ${SED} -i "" -e 's|${WSDIR}/bin/pytho.*|${PYTHON_CMD}|'
.endfor
.for d in ${PY2FIX}
${FIND} ${WSDIR}/${d} -type f -exec ${GREP} -I -l "/usr/bin/env python" {} \; |\
${XARGS} ${SED} -i "" -e 's|/usr/bin/env pytho.*|${PYTHON_CMD}|'
.endfor
${FIND} ${BLDDIR}/${PYTHON_LIBDIR} -type d -name __pycache__ | \
${XARGS} ${RM} -r
.for f in ${DOC2FIX}
${FIND} ${BLDDIR}${DOCSDIR} -type f -name "*${f}" | ${XARGS} \
${SED} -i "" -e 's|${BLDDIR}||g'
.endfor
.for f in ${STG2FIX}
${SED} -i "" -e 's|${BLDDIR}||g' ${BLDDIR}${PREFIX}/${f}
.endfor
${RM} ${BLDDIR}${PYTHON_CMD} ${BADLN:C|^|${BLDDIR}${PREFIX}/share/jupyter/|}
${RM} -r ${BLDDIR}${PREFIX}/var
${RM} ${BLDDIR}${PREFIX}/lib64 ${BLDDIR}${PREFIX}/lib/pkgconfig/blas.pc \
${BLDDIR}${PREFIX}/lib/pkgconfig/cblas.pc \
${BLDDIR}${PREFIX}/lib/pkgconfig/gsl.pc \
${BLDDIR}${PREFIX}/lib/pkgconfig/lapack.pc
# Cannot use a package system for pip and setuptools
${RM} ${BLDDIR}${PREFIX}/bin/easy_install* ${BLDDIR}${PREFIX}/bin/pip*
${RM} -r ${BLDDIR}${PYTHON_SITELIBDIR}/pip-* ${BLDDIR}${PYTHON_SITELIBDIR}/pip/
${RM} -r ${BLDDIR}${PYTHON_SITELIBDIR}/setuptools* \
${BLDDIR}${PYTHON_SITELIBDIR}/easy_install.py \
${BLDDIR}${PYTHON_SITELIBDIR}/pkg_resources \
${BLDDIR}${PYTHON_SITELIBDIR}/__pycache__/easy_install*
# Remove CONFLICTS with lang/python3
${RM} ${BLDDIR}${PREFIX}/bin/python ${BLDDIR}${PREFIX}/bin/python3
${REINPLACE_CMD} -e '/exec/s|python3|${PYTHON_VERSION}|' ${BLDDIR}${PREFIX}/bin/sage
# ${TRUE} because compilation of some .py fails: compileall.py -q to see errors
(cd ${WSDIR} && (${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py \
-d ${PYTHONPREFIX_SITELIBDIR} -f ${PYTHONPREFIX_SITELIBDIR:S;${PREFIX}/;;} || \
${TRUE}))
${FIND} ${BLDDIR}${PREFIX} -name "*.bak" -delete
# See https://lists.freebsd.org/pipermail/freebsd-python/2020-June/020710.html
.if exists(${PYTHON_SITELIBDIR}/path.py-7.1.dist-info/WHEEL)
PLIST_SUB+= EGG="@comment " WHEEL=""
.else
PLIST_SUB+= EGG="" WHEEL="@comment "
.endif
do-install:
cd "${BLDDIR}" && ${FIND} . | ${CPIO} -pduml ${STAGEDIR}
# Remove bad links
${LN} -sf ${DOCSDIR} \
${STAGEDIR}${PREFIX}/share/jupyter/kernels/sagemath/doc
${LN} -sf ${LOCALBASE}/www/JSmol \
${STAGEDIR}${PREFIX}/share/jupyter/nbextensions/jsmol
${LN} -sf ${LOCALBASE}/www/MathJax \
${STAGEDIR}${PREFIX}/share/jupyter/nbextensions/mathjax
${LN} -sf ${LOCALBASE}/www/threejs \
${STAGEDIR}${PREFIX}/share/jupyter/nbextensions/threejs
post-install:
${RM} ${STAGEDIR}${PREFIX}/lib64 ${STAGEDIR}${PREFIX}/libdata/pkgconfig/blas.pc \
${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/distutils-precedence.pth \
${STAGEDIR}${PREFIX}/libdata/pkgconfig/cblas.pc \
${STAGEDIR}${PREFIX}/libdata/pkgconfig/gsl.pc \
${STAGEDIR}${PREFIX}/libdata/pkgconfig/lapack.pc
${RM} -r ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/_distutils_hack
.include <bsd.port.post.mk>
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