Po-Chuan Hsieh 05e7a8b8e1 devel/protobuf: Update to 3.21.7 ... - Bump PORTREVISION of dependent ports for shlib change Changes: https://github.com/protocolbuffers/protobuf/releases		2022-10-09 23:37:51 +08:00
..
2d-rewriter
abinit
afni	science/afni: update to 22.3.00	2022-10-09 13:57:50 +02:00
agrum	science/agrum: Update 1.2.0 -> 1.3.1	2022-10-05 22:56:54 -07:00
aircraft-datcom	Remove WWW lines that have been moved into Makefiles	2022-09-08 17:46:38 +02:00
ALPSCore
antioch
apbs
ascent
atompaw
avogadro2	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
avogadrolibs	science/spglib: Update 1.16.5 -> 2.0.1	2022-10-07 19:36:41 -07:00
axom
bagel
bddsolve
berkeleygw
bodr
buddy
cantera
cardioid
cdcl
cdf
cdk
cdo	science/cdo: Unbreak build	2022-09-17 09:38:15 -07:00
cgnslib
cgribex
checkmol
chemical-mime-data
chemicalfun
chemps2
chemtool
chemtool-devel
chimes-calculator
ChipmunkPhysics
chrono
cif-tools	science/cif-tools: New port: Suite of programs to manipulate and examine mmCIF files	2022-10-03 19:40:27 -07:00
clhep	*/*: Fix stale WWW	2022-09-11 03:29:16 -05:00
clipper
code_saturne
colt
conduit
coordgenlibs	science/coordgenlibs: Update 3.0.0 -> 3.0.1	2022-09-09 22:27:49 -07:00
cp2k	science/cp2k: Update 2022.1 -> 2022.2	2022-10-05 10:24:52 -07:00
cp2k-data	science/cp2k-data: Update 2022.1 -> 2022.2	2022-10-05 15:33:11 -07:00
crf++
csvtk	all: Bump PORTREVISION after lang/go{118,119} update	2022-10-06 14:24:26 -05:00
dakota
dalton
dcl
devisor
dftbplus
dftd4
dimod	science/dimod: Update 0.11.5 -> 0.11.6	2022-10-07 11:36:04 -07:00
dirac
dkh
dlib-cpp
drawxtl
dssp	science/dssp: New port: Application to assign secondary structure to proteins	2022-10-03 19:40:28 -07:00
dvc
dwave-preprocessing
dynare
eccodes
elk	science/elk: Update 8.5.2 -> 8.5.10	2022-09-25 23:30:25 -07:00
elmerfem	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
epte
erd
ergo
erkale
erkale-pseudopotentials
fastcap
fasthenry
fastjet
fisicalab
fleur
frontistr
fsom
fvcom
fvcom-mpi
gabedit
gamess-us
gbtolib
gchemutils
gdma
gemmi	science/gemmi: Fix tests	2022-10-04 00:30:31 -07:00
getdp
ghemical
ghmm
gnudatalanguage
gpaw-setups
gramps
grib_api
gromacs
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf
hdf5
hdf5-18
hdf5-110
healpix
helfem
hepmc3
highfive
hypre
iboview	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
InsightToolkit
isaac-cfd
jdftx
jmol	science/jmol: Update 14.32.75 -> 14.32.76	2022-09-29 23:19:06 -07:00
jstrack
kalzium	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
kim-api
kplib
kst2	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
lammps	devel/kokkos: Update 3.6.01 -> 3.7.00	2022-09-22 08:40:10 -07:00
lamprop
latte
libaec
libccp4
libcifpp	science/libcifpp: New port: Library to manipulate mmCIF and PDB files	2022-10-03 19:40:27 -07:00
libcint
libctl
libecpint
libefp
libgeodecomp
libgetar
libghemical
libgridxc
libint
libint2
libkml
liblinear
libmbd
libmsym
libnegf
liboglappth
libquantum
libssm
libsvm
libsvm-python	Fix WWW in parent/child ports	2022-09-10 19:41:16 +02:00
libtensorflow1
libvdwxc
libxc
liggghts	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
linux-zotero
luscus
madness
maeparser	science/maeparser: Update 1.2.4 -> 1.3.0; Add tests	2022-09-09 22:27:49 -07:00
massxpert	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
mbdyn
mcstas
mcstas-comps
mctc-lib
mcxtrace
mcxtrace-comps
mdynamix
medit
meep
mercantile	science/mercantile: move URL from pkg-desxcr to Makefile	2022-09-09 21:23:12 +02:00
metaphysicl
minc2
mmdb2
mmtf-cpp	science/mmtf-cpp: Update 1.0.0 -> 1.1.0	2022-10-03 18:35:21 -07:00
mol2ps
molgif	all: Bump PORTREVISION after lang/go{118,119} update	2022-10-06 14:24:26 -05:00
molscript
molsketch	science/molsketch: Update 0.7.2 -> 0.7.3	2022-09-26 19:49:03 -07:00
mopac
mpb
mpqc
msms
mstore
multicharge
multiwfn
namd
nest
netcdf
netcdf-cxx
netcdf-fortran
nifticlib
nlcglib	devel/kokkos: Update 3.6.01 -> 3.7.00	2022-09-22 08:40:10 -07:00
nwchem	*/*: Update path set in BUILD_DEPENDS for CMake	2022-09-09 22:32:24 +02:00
nwchem-data
octopus	science/spglib: Update 1.16.5 -> 2.0.1	2022-10-07 19:36:41 -07:00
openbabel
openems
openkim-models
openmc
openmolcas
openmx
opensim-core
opensph	devel/onetbb: Update to 2021.6.0	2022-09-28 12:28:09 +02:00
opsin
orthanc
orthanc-dicomweb
orthanc-mysql
orthanc-postgresql
orthanc-webviewer
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2	devel/onetbb: Update to 2021.6.0	2022-09-28 12:28:09 +02:00
paje
paraview	devel/protobuf: Update to 3.21.7	2022-10-09 23:37:51 +08:00
pastix	science/pastix: upgrade to v6.2.2 and SPM to 1.1.1	2022-10-02 09:52:22 +02:00
pcmsolver
PETSc	*/*: Update path set in BUILD_DEPENDS for CMake	2022-09-09 22:32:24 +02:00
phonopy	science/phonopy: Update 2.16.2.20220930 -> 2.16.3	2022-10-05 15:33:11 -07:00
plumed
pnetcdf
precice
pulseview	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
py-abipy
py-access
py-asap3
py-asdf	science/py-asdf: Fix build after c170c1e126	2022-09-11 00:06:29 +08:00
py-asdf-standard
py-asdf-transform-schemas
py-ase
py-atomium	science/py-atomium: New port: Molecular modeller and file parser	2022-10-03 21:06:22 -07:00
py-avogadrolibs
py-cdo
py-chainer	devel/protobuf: Update to 3.21.7	2022-10-09 23:37:51 +08:00
py-chainer-chemistry
py-chempy
py-cirq-aqt
py-cirq-core
py-cirq-google
py-cirq-ionq
py-cirq-pasqal
py-cirq-rigetti	all: deprecate ports depending on expired py-pyjwt1	2022-09-30 22:06:28 +02:00
py-coards
py-DendroPy
py-dimod	science/py-dimod: Update 0.11.5 -> 0.11.6	2022-10-07 15:33:52 -07:00
py-dipy
py-dlib	*/*: Update path set in BUILD_DEPENDS for CMake	2022-09-09 22:32:24 +02:00
py-dwave-cloud-client	science/py-dwave-cloud-client: Update 0.10.1 -> 0.10.2	2022-09-13 21:41:13 -07:00
py-dwave-greedy
py-dwave-hybrid	science/py-dwave-hybrid: Update 0.6.8 -> 0.6.9	2022-09-15 19:08:08 -07:00
py-dwave-inspector
py-dwave-neal	science/py-dwave-neal: Correct dependencies	2022-10-04 23:18:00 -07:00
py-dwave-networkx
py-dwave-ocean-sdk	science/py-dwave-ocean-sdk: Update 5.4.0 -> 5.5.0	2022-10-07 15:33:53 -07:00
py-dwave-preprocessing
py-dwave-samplers
py-dwave-system	science/py-dwave-system: Update 1.15.0 -> 1.15.1	2022-10-04 23:18:03 -07:00
py-dwave-tabu
py-dwavebinarycsp
py-eccodes
py-esda
py-fresnel	devel/onetbb: Update to 2021.6.0	2022-09-28 12:28:09 +02:00
py-gemmi	science/py-gemmi: Correct CATEGORIES	2022-10-03 19:40:28 -07:00
py-geolinks
py-geomet
py-geometer
py-geometric
py-gpaw
py-GPy
py-GPyOpt
py-gsd
py-h5json
py-h5py
py-hiphive
py-hoomd-blue	devel/onetbb: Update to 2021.6.0	2022-09-28 12:28:09 +02:00
py-inequality
py-jupyter_jsmol
py-kim-query
py-kimpy	science/py-kimpy: New port: Python interface to the KIM-API	2022-10-07 11:36:02 -07:00
py-kinematics
py-kliff	science/py-kliff: Update 0.4.0 -> 0.4.1	2022-10-07 11:36:03 -07:00
py-kpLib
py-liac-arff
py-libgetar
py-libpysal
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mmcif	science/py-mmcif: New port: mmCIF Core Access Library	2022-10-03 18:35:24 -07:00
py-mmtf-python	science/py-mmtf-python: Update 1.1.2 -> 1.1.3	2022-09-29 20:25:04 -07:00
py-molmod
py-moltemplate	science/py-moltemplate: Update 2.20.6 -> 2.20.14	2022-09-26 19:48:59 -07:00
py-netCDF4
py-netcdf-flattener
py-nibabel
py-nilearn
py-obspy
py-oddt
py-OpenFermion
py-OpenFermion-Dirac
py-OpenFermion-PySCF
py-OpenMC
py-openpiv
py-paida
py-paramz
py-penaltymodel
py-phono3py
py-phonopy	science/py-phonopy: Update 2.16.2 -> 2.16.3	2022-10-05 15:33:12 -07:00
py-PubChemPy
py-pupynere
py-py3Dmol
py-pyaixi
py-pyberny
py-pycsw	science/py-pycsw: Update USES=python	2022-09-11 02:11:20 +08:00
py-pydicom
py-PyFR	science/py-PyFR: Update 1.14.0 -> 1.15.0	2022-10-02 21:23:17 -07:00
py-pygeodesy
py-pygeometa	science/py-pygeometa: Update to 0.13.1	2022-10-04 01:10:39 +08:00
py-pygmo2
py-pyked
py-pymatgen
py-pymbd
py-pymol	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
py-PyNE	*/*: Update path set in BUILD_DEPENDS for CMake	2022-09-09 22:32:24 +02:00
py-pyosf
py-pyprecice
py-pyqubo	science/py-pyqubo: Update 1.2.0 -> 1.3.0	2022-10-04 23:18:01 -07:00
py-pysal
py-pyscf	*/*: Update path set in BUILD_DEPENDS for CMake in more ports	2022-09-09 23:02:04 +02:00
py-pyteomics
py-qcelemental
py-qcengine	science/py-qcengine: Update 0.23.0 -> 0.24.1	2022-09-29 23:19:06 -07:00
py-qiskit
py-qiskit-aer	*/*: Update path set in BUILD_DEPENDS for CMake in more ports	2022-09-09 23:02:04 +02:00
py-qiskit-experiments
py-qiskit-finance
py-qiskit-ibm-experiment
py-qiskit-ibm-provider
py-qiskit-ibmq-provider
py-qiskit-nature	science/py-qiskit-nature: Update 0.4.4 -> 0.4.5	2022-09-24 12:18:36 -07:00
py-qiskit-optimization
py-qiskit-terra
py-qspin
py-quantities
py-rmf
py-rmsd
py-ruffus
py-scikit-fuzzy
py-scikit-learn
py-scikit-optimize
py-scikit-sparse
py-scimath
py-scipy	science/py-scipy: Update to 1.9.1	2022-09-17 11:12:06 +08:00
py-scoria
py-segregation	science/py-segregation: Update USES=python	2022-09-11 02:11:23 +08:00
py-segyio	*/*: Update path set in BUILD_DEPENDS for CMake	2022-09-09 22:32:24 +02:00
py-SimpleSpectral
py-sklearn-pandas
py-skrebate
py-spaghetti
py-spglib	science/spglib: Update 1.16.5 -> 2.0.1	2022-10-07 19:36:41 -07:00
py-tensorflow	devel/protobuf: Update to 3.21.7	2022-10-09 23:37:51 +08:00
py-thewalrus
py-tobler
py-trainstation
py-tweedledum	*/*: Update path set in BUILD_DEPENDS for CMake in more ports	2022-09-09 23:02:04 +02:00
py-veusz	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
pybrain
pynn
q
qbox	science/qbox: Update 1.74.4 -> 1.75.0	2022-09-26 19:49:03 -07:00
qcl
qiskit-aer
qmcpack
quantum-espresso
quantum-espresso-pseudopotentials
quantum-jet
qwalk
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-etm
R-cran-FAdist
R-cran-fastICA
R-cran-kernlab
R-cran-ks
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit
rmf
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
segyio
serac
shelxle	science/shelxle: Update 1.0.1428 -> 1.0.1432	2022-09-22 08:40:12 -07:00
siconos
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody
simgrid
simint
simlib
simple-dftd3
simsmith
sirius	science/spglib: Update 1.16.5 -> 2.0.1	2022-10-07 19:36:41 -07:00
smoldyn
sparta
spglib	science/spglib: Update 1.16.5 -> 2.0.1	2022-10-07 19:36:41 -07:00
step	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
svmlight
tblite
teem
tfel
tfel-edf
thermofun
tinker
trilinos
tweedledum
udunits
ukrmol+
v_sim	Convert five port descriptions and one configuration file to UTF-8.	2022-09-14 08:00:38 +00:00
vipster	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
vmd
voro++
votca
wannier90
wwplot
wxmacmolplt
xcfun
xcrysden
xdrawchem	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
xtb
yoda
zotero
Makefile	science/py-kimpy: New port: Python interface to the KIM-API	2022-10-07 11:36:02 -07:00