Jason W. Bacon e24fe4fd0e biology/py-deeptools: Update to 3.5.2 ... Numerous enhancements and bug fixes Changes: https://github.com/deeptools/deepTools/releases		2023-06-19 07:09:17 -05:00
..
abyss	biology/abyss: Fix build with llvm15	2023-06-07 09:25:09 +02:00
ad2vcf
artemis
atac-seq
augustus
avida
babel
bamtools
bamutil
barrnap
bbmap
bcf-score
bcftools
bedtools
bfc
bio-mocha
bioawk
biococoa
biolibc	biology/biolibc: Update to 0.2.4.3	2023-06-10 07:15:29 -05:00
biolibc-tools	biology/biolibc-tools: Update to 0.1.4.6	2023-06-10 06:57:56 -05:00
bioparser
biosig	*/*: llvm15 build fixes	2023-05-17 18:30:15 +02:00
biosoup	biology/biosoup: Update 0.10.0-2 → 0.11.0	2023-05-19 00:54:16 -07:00
biostar-tools
bolt-lmm
bowtie
bowtie2
bwa
canu
cd-hit
cdbfasta
checkm
chip-seq	biology/chip-seq: Metaport for ChIP-Seq analysis	2023-06-14 16:23:37 -05:00
clustal-omega
clustalw
cufflinks
cytoscape
ddocent
diamond
dsr-pdb
edlib
emboss
erminej
exonerate
fasda	biology/fasda: Update to 0.1.3	2023-06-10 06:57:56 -05:00
fasta
fasta3
fastahack
fastdnaml
fastool
fastp	biology/fastp: Update to 0.23.4	2023-05-31 10:40:00 -05:00
fastq-trim
fastqc
fasttree
fastx-toolkit
figtree
flash
fluctuate
freebayes
garlic
gatk	biology/gatk: Update 4.3.0.0 → 4.4.0.0	2023-06-04 15:02:58 -07:00
gcta
gemma
generand
gff2ps	biology/gff2ps: drop maintainership	2023-05-21 16:20:36 +00:00
gffread
gmap
gperiodic
graphlan
groopm
haplohseq
hhsuite
hisat2
hmmer
htslib
hyphy	biology/hyphy: Update to 2.5.51hf	2023-05-28 21:09:56 -03:00
igv
infernal
iolib
iqtree
jalview	biology/jalview: Fix build by using gradle-7.6.1 instead of gradle-8.0.1	2023-06-18 02:58:53 -07:00
jellyfish
kallisto
kmcp	biology/kmcp: Update 0.9.1 → 0.9.2	2023-05-21 23:54:53 -07:00
lamarc
libbigwig
libcombine	biology/libcombine: Fix build with libsbml 5.20.0	2023-05-27 12:24:05 +08:00
libgff
libgtextutils
libneurosim
libnuml
libsbml	biology/libsbml: Update to 5.20.0	2023-05-27 12:07:11 +08:00
libsedml	biology/libsedml: Fix build with libsbml 5.20.0	2023-05-27 12:24:05 +08:00
linux-foldingathome
mafft
mapm3
megahit
metaeuk
migrate
minimap2
mmseqs2
molden
mothur
mrbayes
mummer
muscle
ncbi-blast+	biology/ncbi-blast+: Tag only for 64-bit architectures	2023-05-29 08:59:01 -05:00
ncbi-cxx-toolkit
ncbi-entrez-direct
ncbi-toolkit	biology/ncbi-toolkit: Fix build with llvm15	2023-06-06 22:45:25 +02:00
ncbi-vdb
ngs-sdk
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
pbseqan
peak-classifier	biology/peak-classifier: Update to 0.1.4.8	2023-06-10 06:57:56 -05:00
pear-merger
phrap
phred
phyml
picard-tools
plink
pooler
primer3
prodigal
prodigy-lig
protomol
psi88
py-bcbio-gff
py-biom-format
py-biopython
py-biosig
py-bx-python
py-crossmap
py-cutadapt
py-deeptools	biology/py-deeptools: Update to 3.5.2	2023-06-19 07:09:17 -05:00
py-deeptoolsintervals
py-dna-features-viewer
py-dnaio
py-ete3
py-Genesis-PyAPI
py-gffutils
py-goatools
py-gtfparse
py-hits
py-libnuml
py-libsedml
py-loompy
py-macs2	biology/py-macs2: Update to 2.2.8	2023-05-22 12:14:04 -05:00
py-mrcfile
py-multiqc
py-ont-fast5-api
py-orange3-bioinformatics
py-orange3-single-cell
py-pandas-charm
py-py2bit
py-pybigwig
py-pyfaidx
py-pyrodigal
py-pysam	biology/py-pysam: Update 0.20.0 → 0.21.0	2023-06-16 14:46:56 -07:00
py-PySCeS
py-python-libsbml
py-pywgsim
py-resdk
py-scikit-bio
py-valerius
py-xenaPython
pyfasta
python-nexus
rainbow
rampler
readseq
recombine
rna-seq
ruby-bio
rubygem-bio
rubygem-bio-executables
rubygem-bio-old-biofetch-emulator
rubygem-bio-shell
sam2pairwise
samtools
scrm
seaview
seqan
seqan1
seqan3
seqan-apps
seqio
seqkit
seqtk	biology/seqtk: Update to 1.4	2023-05-23 17:42:13 -05:00
sigviewer
sim4
slclust
smithwaterman
snpeff
spoa
sra-tools
stacks
star
stringtie
subread
tabixpp
taxonkit
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ucsc-userapps
ugene
unikmer
vcf2hap
vcf-split
vcflib
vcftools
velvet
viennarna
vsearch
vt
wfa2-lib
wise	*/*: llvm15 build fixes	2023-05-17 18:30:15 +02:00
Makefile	biology/chip-seq: Metaport for ChIP-Seq analysis	2023-06-14 16:23:37 -05:00