Antoine Brodin a0b36f8e26 Deprecate: Broken for more than 6 months		2014-03-18 18:10:25 +00:00
..
ariadne
artemis
avida
babel
biococoa
biojava	Unbreak	2014-03-08 16:39:01 +00:00
blast
blat	Convert b* to USES=zip	2014-03-07 15:52:40 +00:00
boinc-simap	Drop maintainership BOINC ports, old machine running them gave up.	2014-02-04 17:54:29 +00:00
chemeq
clustalw
consed	Remove trailing whitespaces from category biology	2014-02-21 13:35:26 +00:00
crux	Update the default version of GCC used in the Ports Collection from	2014-03-10 20:55:20 +00:00
embassy
emboss
fasta
fasta3	biology/fasta3: Checked new distfile and regenerated distinfo to unbreak	2014-03-02 10:58:50 +00:00
fastdnaml	Support staging	2014-02-16 11:32:43 +00:00
finchtv	Deprecate: Broken for more than 6 months	2014-03-18 18:10:25 +00:00
fluctuate	Support staging	2014-02-16 11:35:00 +00:00
garlic	- Convert USE_GMAKE to USES	2014-03-13 07:41:34 +00:00
genpak	Deprecate a few unmaintained ports (leaf ports, non staged and unmaintained since more than 12 years)	2014-03-08 22:26:21 +00:00
gff2ps
gmap
gperiodic
grappa
hmmer
iolib
jalview
lagan
lamarc
libgenome	Deprecate a few old unmaintained ports	2014-03-11 21:21:14 +00:00
libsbml	Convert b* to USES=zip	2014-03-07 15:52:40 +00:00
linux-foldingathome
mafft	- Convert USE_GMAKE to USES	2014-03-13 07:41:34 +00:00
mapm3
migrate
molden	Update the default version of GCC used in the Ports Collection from	2014-03-10 20:55:20 +00:00
mopac	- Convert USE_GMAKE to USES	2014-03-13 07:41:34 +00:00
mrbayes
mummer	- Convert USE_GMAKE to USES	2014-03-13 07:41:34 +00:00
muscle	- Convert USE_GMAKE to USES	2014-03-13 07:41:34 +00:00
ncbi-toolkit
njplot	Remove trailing whitespaces from category biology	2014-02-21 13:35:26 +00:00
ortep3	Update the default version of GCC used in the Ports Collection from	2014-03-10 20:55:20 +00:00
p5-AcePerl	- Stage support	2014-02-10 06:56:52 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS	- Stage support	2014-01-31 12:47:06 +00:00
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl	Remove trailing whitespaces from category biology	2014-02-21 13:35:26 +00:00
p5-bioperl-run	Remove trailing whitespaces from category biology	2014-02-21 13:35:26 +00:00
paml	Support staging	2014-03-14 12:59:33 +00:00
phd2fasta
phrap
phred
phylip	- Convert USE_GMAKE to USES	2014-03-13 07:41:34 +00:00
phyml	- Stage support	2014-01-31 12:32:55 +00:00
platon	Update the default version of GCC used in the Ports Collection from	2014-03-10 20:55:20 +00:00
plink	Update the default version of GCC used in the Ports Collection from	2014-03-10 20:55:20 +00:00
plinkseq	Convert to dos2unix	2014-03-07 11:37:35 +00:00
povchem
primer3	Support staging	2014-03-14 12:35:03 +00:00
protomol
psi88	Update the default version of GCC used in the Ports Collection from	2014-03-10 20:55:20 +00:00
py-biopython	Update the default version of GCC used in the Ports Collection from	2014-03-10 20:55:20 +00:00
pycogent	Update the default version of GCC used in the Ports Collection from	2014-03-10 20:55:20 +00:00
pyfasta	Update the default version of GCC used in the Ports Collection from	2014-03-10 20:55:20 +00:00
pymol	- Convert USE_GMAKE to USES	2014-03-13 07:41:34 +00:00
python-nexus	- Convert to PYDISTUTILS_AUTOPLIST	2014-01-31 12:30:39 +00:00
rasmol	Deprecate a few unmaintained ports (leaf ports, non staged and unmaintained since more than 12 years)	2014-03-08 22:26:21 +00:00
recombine	- Support staging	2014-02-16 11:39:42 +00:00
ruby-bio
seaview	- Stage support	2014-02-27 08:46:42 +00:00
seqan	Update the default version of GCC used in the Ports Collection from	2014-03-10 20:55:20 +00:00
seqio	Support staging	2014-02-16 11:42:09 +00:00
seqtools	Fix old makeplist bug.	2014-02-12 14:03:25 +00:00
sim4	Support staging	2014-02-16 11:43:07 +00:00
ssaha	biology/ssaha: undeprecate, this port fetches and builds fine.	2014-03-09 09:39:50 +00:00
t_coffee	Update the default version of GCC used in the Ports Collection from	2014-03-10 20:55:20 +00:00
tinker	Update the default version of GCC used in the Ports Collection from	2014-03-10 20:55:20 +00:00
treepuzzle
treeviewx
tRNAscan-SE	biology/tRNAscan-SE: Fix hardcoded perl path	2014-02-05 23:44:50 +00:00
ugene	Update to version 1.13.1.	2014-03-07 07:39:20 +00:00
velvet	- Convert USE_GMAKE to USES	2014-03-13 07:41:34 +00:00
wise	biology/wise: Add dragonfly support	2014-02-05 23:42:06 +00:00
xmolwt	- Convert USE_GMAKE to USES	2014-03-13 07:41:34 +00:00
Makefile