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freebsd-ports/biology
History
Baptiste Daroussin 895c00dee5 USES=execinfo
2014-08-04 23:06:21 +00:00
..
ariadne
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
artemis
Support stage
2014-01-20 23:06:48 +00:00
avida
- Fix build with clang
2013-11-27 16:07:51 +00:00
babel
Rename biology/ patch-xy patches to reflect the files they modify.
2014-07-28 14:22:16 +00:00
biococoa
Update BioCocoa to the latest release.
2013-10-08 18:34:45 +00:00
biojava
- add stage support
2014-06-01 10:37:22 +00:00
blast
Mark as broken: no distinfo provided
2014-06-22 22:06:01 +00:00
blat
Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mk
2014-06-25 08:55:55 +00:00
boinc-simap
Drop maintainership BOINC ports, old machine running them gave up.
2014-02-04 17:54:29 +00:00
chemeq
Stage support
2014-01-18 15:55:42 +00:00
clustalw
Multiple ports: reset maintainers
2014-05-26 02:33:38 +00:00
consed
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
crux
Convert a bunch of USE_BZIP2 to USES=tar:bzip2
2014-07-29 18:41:15 +00:00
embassy
Reset maintainership for ports not staged with no pending PR
2014-07-23 16:44:27 +00:00
emboss
Remove indefinite articles and trailing periods from COMMENT, plus
2014-06-09 11:21:52 +00:00
fasta
- Add staging support
2014-03-24 09:01:39 +00:00
fasta3
biology/fasta3: Checked new distfile and regenerated distinfo to unbreak
2014-03-02 10:58:50 +00:00
fastdnaml
Support staging
2014-02-16 11:32:43 +00:00
fluctuate
Support staging
2014-02-16 11:35:00 +00:00
garlic
biology/garlic: Stage properly to unbreak
2014-07-17 10:13:06 +00:00
gff2ps
Add staging support
2014-03-23 17:43:41 +00:00
gmap
Support stage
2013-12-10 17:21:46 +00:00
gperiodic
Add staging support
2014-03-23 18:09:23 +00:00
grappa
- Respect CC/CFLAGS
2013-12-20 13:27:13 +00:00
hmmer
Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS.
2014-07-15 14:54:54 +00:00
iolib
- I forgot to svn add a new patch
2014-05-31 18:03:08 +00:00
jalview
Fix properties on pkg-plist
2014-01-21 23:18:05 +00:00
lagan
- Fix build
2013-11-27 13:16:47 +00:00
lamarc
- rename AL2 to APACHE20 in Mk/bsd.licenses.db.mk
2013-12-30 20:55:18 +00:00
libsbml
- Update to 5.10.0
2014-05-13 07:04:17 +00:00
linux-foldingathome
Stagify.
2014-07-06 16:05:34 +00:00
mafft
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
mapm3
- Fix build with clang
2014-01-12 19:07:28 +00:00
migrate
- Stagify; cleanup Makefile and reorder the knobs a bit
2014-01-29 12:08:29 +00:00
molden
Catch a couple of missing convertsion to :tu/:tl
2014-05-05 11:15:53 +00:00
mopac
- Add staging support
2014-03-23 18:10:41 +00:00
mrbayes
Support stage
2013-12-10 17:54:12 +00:00
mummer
biology/mummer: Use OPSYS with OSVERSION
2014-07-19 22:00:16 +00:00
muscle
Update to 3.8.31.
2014-06-17 21:36:06 +00:00
ncbi-toolkit
Add staging support
2014-03-23 20:50:54 +00:00
njplot
- add stage support
2014-06-01 11:26:39 +00:00
ortep3
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
p5-AcePerl
Rename biology/ patch-xy patches to reflect the files they modify.
2014-07-28 14:22:16 +00:00
p5-Bio-ASN1-EntrezGene
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
p5-Bio-Das
- support stage
2014-01-05 12:07:20 +00:00
p5-Bio-Das-Lite
- fix pkg-plist
2014-01-30 07:34:25 +00:00
p5-Bio-GFF3
- Fix PLIST
2014-03-26 14:23:09 +00:00
p5-Bio-Glite
- support stage
2014-01-05 12:07:20 +00:00
p5-Bio-Graphics
Really fix.
2014-07-25 23:08:58 +00:00
p5-Bio-MAGETAB
- update to 1.31
2014-05-16 13:33:02 +00:00
p5-Bio-NEXUS
- Stage support
2014-01-31 12:47:06 +00:00
p5-Bio-Phylo
- support stage
2014-01-05 12:07:20 +00:00
p5-Bio-SCF
Remove all the bootstrap files (.bs) from the plists.
2014-06-10 12:14:12 +00:00
p5-bioperl
biology/p5-bioperl: fix pkg-descr sidenote link
2014-08-04 04:32:38 +00:00
p5-bioperl-run
biology/p5-bioperl-run: 1.6.1 -> 1.6.901, unbreak, stagify
2014-08-04 08:54:10 +00:00
paml
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
phd2fasta
Reset maintainership for ports not staged with no pending PR
2014-07-23 16:44:27 +00:00
phrap
Replace maintainer's email address with one that seems to work
2014-05-10 18:07:52 +00:00
phred
Replace maintainer's email address with one that seems to work
2014-05-10 18:07:52 +00:00
phylip
The FreeBSD x11@ and graphics team proudly presents
2014-04-16 18:28:47 +00:00
phyml
- Stage support
2014-01-31 12:32:55 +00:00
platon
Add a DOCS option.
2014-08-03 21:44:23 +00:00
plink
Update the default version of GCC used in the Ports Collection from
2014-03-10 20:55:20 +00:00
plinkseq
- Switch to USES=libtool, drop .la files
2014-07-22 22:12:15 +00:00
povchem
Rename biology/ patch-xy patches to reflect the files they modify.
2014-07-28 14:22:16 +00:00
primer3
Quote ${CC} and similar variables in MAKE_ARGS.
2014-05-20 19:32:39 +00:00
protomol
Reset maintainership for ports not staged with no pending PR
2014-07-23 16:44:27 +00:00
psi88
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
py-biopython
- Stage
2014-04-27 01:59:47 +00:00
pycogent
- Stage support [1]
2014-05-02 14:00:13 +00:00
pyfasta
- Update to 0.5.2
2014-04-06 04:05:43 +00:00
pymol
Convert a bunch of USE_BZIP2 to USES=tar:bzip2
2014-07-29 18:41:15 +00:00
python-nexus
Remove indefinite articles and trailing periods from COMMENT, plus
2014-06-09 11:21:52 +00:00
recombine
- Support staging
2014-02-16 11:39:42 +00:00
ruby-bio
Support stage
2014-04-07 13:01:26 +00:00
seaview
- Update to 4.5.2
2014-06-04 06:28:56 +00:00
seqan
Use gcc on all platforms.
2014-07-10 22:29:52 +00:00
seqio
Support staging
2014-02-16 11:42:09 +00:00
seqtools
USES=execinfo
2014-08-04 23:06:21 +00:00
sim4
Support staging
2014-02-16 11:43:07 +00:00
ssaha
biology/ssaha: undeprecate, this port fetches and builds fine.
2014-03-09 09:39:50 +00:00
t_coffee
Remove indefinite articles and trailing periods from COMMENT, plus
2014-06-09 11:21:52 +00:00
tinker
- Un-break fetch stage: the name scheme of the source tarballs has changed
2014-04-22 19:28:18 +00:00
treepuzzle
- Remove NO_STAGE as these have been tested to be safe
2013-09-25 00:54:08 +00:00
treeviewx
Unbreak
2014-06-04 20:08:15 +00:00
tRNAscan-SE
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
ugene
USES=execinfo
2014-08-04 23:06:21 +00:00
velvet
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
wise
- Add staging support
2014-03-24 10:46:35 +00:00
xmolwt
Add staging support
2014-03-24 11:06:56 +00:00
Makefile
Remove expired ports:
2014-04-18 11:17:45 +00:00