Yuri Victorovich 290983fbb4 biology/gatk: update 4.5.0.0 → 4.6.0.0		2024-07-11 20:51:21 -07:00
..
abyss
ad2vcf
artemis
atac-seq
augustus
avida
babel
bamtools
bamutil
barrnap
bbmap
bcf-score
bcftools
bedtools
bfc
bifrost
bio-mocha
bioawk
biococoa
biolibc
biolibc-tools
bioparser
biosig
biosoup
biostar-tools
bolt-lmm
bowtie
bowtie2
btllib
bwa
canu
cd-hit
cdbfasta
checkm
chip-seq
clustal-omega
clustalw
cufflinks
cytoscape
ddocent
diamond
dsr-pdb
edlib
emboss
erminej
exonerate
fasda
fasta
fasta3
fastahack
fastdnaml
fastool
fastp
fastq-trim
fastqc
fasttree
fastx-toolkit
figtree
flash
fluctuate
freebayes
garlic
gatk	biology/gatk: update 4.5.0.0 → 4.6.0.0	2024-07-11 20:51:21 -07:00
gcta	biology/gcta: Unbreak fetch	2024-07-08 17:04:44 -05:00
gemma
generand
gff2ps
gffread
gmap
gperiodic
graphlan
groopm
haplohseq
hhsuite
hisat2
hmmer
htslib
hyphy
igv
infernal
iolib
iqtree	biology/iqtree: Update to 2.3.5	2024-07-01 18:28:31 -03:00
jalview
jellyfish
kallisto
kmcp	all: Bump after lang/go121 update	2024-07-03 08:29:54 +00:00
lamarc
libbigwig
libcombine
libgff
libgtextutils
libneurosim
libnuml
libsbml
libsedml
linux-foldingathome
locarna
mafft
mapm3
mashmap
megahit
metaeuk
migrate	biology/migrate: fix build on !x86	2024-07-09 12:04:31 +02:00
minimap2
mmseqs2
molden
mothur
mrbayes
mummer
muscle
ncbi-blast+
ncbi-cxx-toolkit	biology/ncbi-cxx-toolkit: update 28.0.5 → 28.0.6	2024-07-06 18:27:07 -07:00
ncbi-entrez-direct	all: Bump after lang/go121 update	2024-07-03 08:29:54 +00:00
ncbi-toolkit
ncbi-vdb
ngs-sdk
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
peak-classifier
pear-merger
phrap
phred
phyml
picard-tools
plink
pooler
primer3
prodigal
prodigy-lig
protomol
psi88
py-bcbio-gff
py-biom-format
py-biopython
py-biosig
py-bx-python
py-crossmap
py-cutadapt
py-deeptools
py-deeptoolsintervals
py-dna-features-viewer
py-dnaio	biology/py-dnaio: Update to 1.2.1	2024-07-04 09:15:39 +00:00
py-ete3
py-Genesis-PyAPI
py-gffutils
py-goatools
py-gtfparse
py-hits
py-htseq
py-libnuml
py-libsedml
py-loompy
py-macs2
py-macs3
py-mrcfile
py-multiqc	devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml	2024-07-07 16:05:33 +08:00
py-newick
py-ont-fast5-api
py-orange3-bioinformatics
py-orange3-single-cell
py-pandas-charm
py-py2bit
py-pybigwig
py-pyfaidx
py-pyrodigal
py-pysam
py-PySCeS
py-python-libsbml
py-pywgsim
py-resdk
py-scikit-bio
py-valerius
py-xenaPython
pyfasta
python-nexus
R-cran-Biobase
R-cran-BiocGenerics
R-cran-BiocManager
rainbow
rampler
readseq
rna-seq
ruby-bio
rubygem-bio
rubygem-bio-executables
rubygem-bio-old-biofetch-emulator
rubygem-bio-shell
salmon	devel/onetbb: Update to 2021.13.0	2024-07-04 13:39:44 +02:00
sam2pairwise
samtools
scrm
seaview
seqan
seqan1
seqan3
seqan-apps
seqkit	all: Bump after lang/go121 update	2024-07-03 08:29:54 +00:00
seqtk
seqwish
sigviewer
slclust
smithwaterman
snpeff
spoa
sra-tools
stacks
star
stringtie
subread
tabixpp
taxonkit	biology/taxonkit: update 0.16.0 → 0.17.0	2024-07-04 09:32:16 -07:00
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ucsc-userapps
ugene
unikmer	all: Bump after lang/go121 update	2024-07-03 08:29:54 +00:00
vcf2hap
vcf-split
vcflib
vcftools
velvet
viennarna
vsearch
vt
wfa2-lib
wise
Makefile