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78 lines
2.2 KiB
Makefile
78 lines
2.2 KiB
Makefile
# Created by: Hannes Hauswedell <h2+fbsdports@fsfe.org>
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# $FreeBSD$
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PORTNAME= ugene
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DISTVERSION= 1.12.3
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CATEGORIES= biology
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MASTER_SITES= http://ugene.unipro.ru/downloads/
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DISTFILES= ${DISTNAME}${EXTRACT_SUFX} ${PORTDOCS}
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DIST_SUBDIR= ${PORTNAME}
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EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX}
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MAINTAINER= h2+fbsdports@fsfe.org
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COMMENT= Free, open-source, cross-platform bioinformatics toolkit
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LICENSE= GPLv2
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.if !exists(/usr/include/execinfo.h)
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LIB_DEPENDS= libexecinfo.so:${PORTSDIR}/devel/libexecinfo
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.endif
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RUN_DEPENDS= bash:${PORTSDIR}/shells/bash
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USES= qmake
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USE_GL= glu
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USE_QT4= gui webkit xml svg linguist_build moc_build qmake_build \
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qtestlib_build rcc_build uic_build imageformats_run
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USE_XORG= xtst
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USE_LDCONFIG= yes
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INSTALLS_ICONS= yes
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QMAKE_ARGS= INSTALL_PREFIX=${PREFIX} UGENE_INSTALL_DATA=${DATADIR} \
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INSTALL_MANDIR=${MAN1PREFIX}/man
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ALL_TARGET= release
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DOCSDIR= ${DATADIR}/manuals
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PORTDOCS= QueryDesigner_UserManual.pdf UniproUGENE_UserManual.pdf \
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WorkflowDesigner_UserManual.pdf
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OPTIONS_DEFINE= DOCS
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DOCS_DESC= Install official UGENE documentation (PDF)
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.include <bsd.port.pre.mk>
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.if ${OSVERSION} > 1000054
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CXXFLAGS+= -std=c++11
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.endif
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.if ${ARCH} == "amd64"
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# XXX: need to manually tell the build we are on x64
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QMAKE_ARGS+= CONFIG+=x64
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PLIST_SUB= NOX64="@comment "
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.else
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PLIST_SUB= NOX64=""
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.endif
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.if ${MACHINE_CPU:Msse2}
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QMAKE_ARGS+= UGENE_SSE2_DETECTED=1
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.endif
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post-extract:
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${CP} -p ${_DISTDIR}/*.pdf ${WRKSRC}/data/manuals
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post-patch:
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# yes, bash is required, stuff will not execute with sh
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@${REINPLACE_CMD} -e 's|/bin/bash|/usr/bin/env bash|' \
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${WRKSRC}/src/gen_bin_script.cmd \
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${WRKSRC}/installer/_common_data/ugene
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# remove BOM from files and non-latin comments; gcc 4.2 does not like them
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@${REINPLACE_CMD} -e '1s|^[^/]*|| ; /lose sequence view,/d' \
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${WRKSRC}/src/plugins/GUITestBase/src/tests/common_scenarios/smith_waterman_dialog/GTTestsSWDialog.cpp \
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${WRKSRC}/src/plugins/GUITestBase/src/tests/common_scenarios/repeat_finder/GTTestsRepeatFinder.cpp
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post-configure:
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@${REINPLACE_CMD} -e '/^LFLAGS/s,-pthread,-lexecinfo &,' \
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${WRKSRC}/src/ugenecl/Makefile.Release \
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${WRKSRC}/src/ugeneui/Makefile.Release
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.include <bsd.port.post.mk>
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