| .. |
|
adun
|
- reset MAINTAINER
|
2012-06-26 05:44:19 +00:00 |
|
ariadne
|
|
|
|
artemis
|
Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,
|
2011-07-21 05:03:02 +00:00 |
|
avida
|
- Update to version 2.12.3
|
2012-06-17 20:04:32 +00:00 |
|
babel
|
|
|
|
belvu
|
|
|
|
biococoa
|
- reset MAINTAINER
|
2012-06-26 05:44:19 +00:00 |
|
biojava
|
Fix typos in COMMENT
|
2012-07-29 11:17:02 +00:00 |
|
blast
|
|
|
|
blat
|
|
|
|
boinc-simap
|
- Adjust BOINC_* variables to be consistent with new system in boinc-client
|
2012-05-16 13:46:30 +00:00 |
|
chemeq
|
Remove WWW entries from unmaintained ports that return 404 or where the domain
|
2011-08-02 20:58:23 +00:00 |
|
clustalw
|
Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since
|
2011-08-11 19:20:17 +00:00 |
|
consed
|
|
|
|
crux
|
Does not build on powerpc-9: error in pthreads.
|
2011-11-10 14:30:51 +00:00 |
|
dna-qc
|
|
|
|
dotter
|
|
|
|
embassy
|
- update png to 1.5.10
|
2012-06-01 05:26:28 +00:00 |
|
emboss
|
- update png to 1.5.10
|
2012-06-01 05:26:28 +00:00 |
|
fasta
|
|
|
|
fasta3
|
- remove maintainer tags from pkg-descr
|
2011-10-22 23:50:23 +00:00 |
|
fastdnaml
|
- Fix MASTER_SITES and WWW: line
|
2011-08-26 00:24:48 +00:00 |
|
finchtv
|
|
|
|
fluctuate
|
|
|
|
garlic
|
Fix typos in COMMENT
|
2012-07-25 06:32:06 +00:00 |
|
genpak
|
- update png to 1.5.10
|
2012-06-01 05:26:28 +00:00 |
|
gff2ps
|
- Update MASTER_SITES and WWW: line
|
2012-02-19 23:24:52 +00:00 |
|
gmap
|
|
|
|
gperiodic
|
- update png to 1.5.10
|
2012-06-01 05:26:28 +00:00 |
|
grappa
|
|
|
|
hmmer
|
|
|
|
iolib
|
- Remove WITH_FBSD10_FIX, is no longer needed
|
2011-11-09 15:26:04 +00:00 |
|
jalview
|
Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,
|
2011-07-21 05:03:02 +00:00 |
|
lagan
|
|
|
|
lamarc
|
- Update to version 2.1.8
|
2012-06-17 20:22:32 +00:00 |
|
libgenome
|
|
|
|
libsbml
|
|
|
|
linux-foldingathome
|
|
|
|
mafft
|
- Submitter is now maintainer
|
2012-08-07 13:54:02 +00:00 |
|
mapm3
|
|
|
|
migrate
|
|
|
|
molden
|
Switch from libglut to freeglut and retire libglut. Libglut hasn't been
|
2012-08-04 22:52:02 +00:00 |
|
mopac
|
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
|
2011-09-23 22:26:39 +00:00 |
|
mrbayes
|
|
|
|
mummer
|
- Update to 3.23
|
2012-01-17 00:51:39 +00:00 |
|
muscle
|
Fix typos in COMMENT
|
2012-07-24 07:19:21 +00:00 |
|
ncbi-toolkit
|
- remove maintainer tags from pkg-descr
|
2011-10-22 23:50:23 +00:00 |
|
njplot
|
s/X11BASE/LOCALBASE/, or equivalent.
|
2012-06-24 21:53:38 +00:00 |
|
ortep3
|
|
|
|
p5-AcePerl
|
- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or
|
2012-06-10 18:42:48 +00:00 |
|
p5-Bio-ASN1-EntrezGene
|
- remove maintainer tags from pkg-descr
|
2011-10-22 23:50:23 +00:00 |
|
p5-Bio-Das
|
- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or
|
2012-06-10 18:42:48 +00:00 |
|
p5-Bio-Das-Lite
|
- Fix missing DEPENDS to silence build warnings
|
2011-09-24 20:45:23 +00:00 |
|
p5-Bio-GFF3
|
Fix typos in COMMENT
|
2012-07-25 06:32:06 +00:00 |
|
p5-Bio-Glite
|
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
|
2012-01-21 17:40:15 +00:00 |
|
p5-Bio-Graphics
|
- Update to 2.29
|
2012-06-18 09:30:35 +00:00 |
|
p5-Bio-MAGETAB
|
- Update to 1.23
|
2012-07-19 16:42:55 +00:00 |
|
p5-Bio-NEXUS
|
- Update to 0.78
|
2012-02-11 02:04:41 +00:00 |
|
p5-Bio-Phylo
|
- Update to 0.50
|
2012-06-12 18:55:28 +00:00 |
|
p5-Bio-SCF
|
At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
|
2012-01-21 17:40:15 +00:00 |
|
p5-bioperl
|
- Remove SITE_PERL from *_DEPENDS
|
2012-06-30 05:23:19 +00:00 |
|
p5-bioperl-run
|
- Remove SITE_PERL from *_DEPENDS
|
2012-06-30 14:53:22 +00:00 |
|
paml
|
|
|
|
phd2fasta
|
|
|
|
phrap
|
|
|
|
phred
|
|
|
|
phylip
|
|
|
|
phyml
|
|
|
|
platon
|
The vast majority of pkg-descr files had the following format when they
|
2011-10-24 09:11:38 +00:00 |
|
povchem
|
- update png to 1.5.10
|
2012-06-01 05:26:28 +00:00 |
|
primer3
|
- Respect CC
|
2012-01-27 17:41:00 +00:00 |
|
protomol
|
Switch from libglut to freeglut and retire libglut. Libglut hasn't been
|
2012-08-04 22:52:02 +00:00 |
|
psi88
|
|
|
|
py-biopython
|
- Update to 1.59
|
2012-03-06 06:40:50 +00:00 |
|
pycogent
|
- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or
|
2012-06-10 18:42:48 +00:00 |
|
pyfasta
|
- Update to 0.4.5
|
2012-02-23 13:43:25 +00:00 |
|
pymol
|
Switch from libglut to freeglut and retire libglut. Libglut hasn't been
|
2012-08-04 22:52:02 +00:00 |
|
python-nexus
|
- Update to 0.87
|
2011-12-23 08:05:00 +00:00 |
|
rasmol
|
|
|
|
recombine
|
|
|
|
ruby-bio
|
|
|
|
seaview
|
- update png to 1.5.10
|
2012-06-01 05:26:28 +00:00 |
|
seqan
|
Replace USE_GCC=4.4+ by USE_GCC=4.6+ since GCC 4.4 is on its way out.
|
2012-07-21 22:20:32 +00:00 |
|
seqio
|
|
|
|
sim4
|
|
|
|
ssaha
|
|
|
|
t_coffee
|
- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or
|
2012-06-10 18:42:48 +00:00 |
|
tinker
|
- ${FFLAGS} might contain commas
|
2011-10-10 20:17:22 +00:00 |
|
treepuzzle
|
|
|
|
treeviewx
|
- update png to 1.5.10
|
2012-06-01 05:26:28 +00:00 |
|
tRNAscan-SE
|
|
|
|
velvet
|
Update to 1.1.04
|
2011-06-09 16:33:21 +00:00 |
|
wise
|
|
|
|
xdrawchem
|
- update png to 1.5.10
|
2012-06-01 05:26:28 +00:00 |
|
xmolwt
|
The vast majority of pkg-descr files had the following format when they
|
2011-10-24 09:11:38 +00:00 |
|
Makefile
|
SeqAn is an open source C++ library of efficient algorithms
|
2012-06-06 17:51:33 +00:00 |
