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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-23 04:23:08 +00:00
freebsd-ports/biology
2017-04-22 12:45:43 +00:00
..
ariadne
artemis - Fix shebangs 2017-04-21 16:28:25 +00:00
avida Mark various ports as broken on armv6: invokes x86 asm. 2017-02-26 12:56:41 +00:00
babel
bcftools
bedtools
biococoa
biojava
blat
bowtie - Fix shebangs 2017-04-22 09:25:44 +00:00
bowtie2 Update devel/tbb to 2017.5 2017-03-07 12:44:41 +00:00
bwa Mark various ports broken on aarch64 and armv6. 2017-01-31 03:40:46 +00:00
cd-hit Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
cdbfasta Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/ 2017-01-20 20:33:30 +00:00
chemeq
clustalw
consed
crux Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
diamond biology/diamond: Update to version 0.8.38 2017-04-21 14:46:07 +00:00
emboss
fasta
fasta3
fastdnaml
fastool Never set WRKSRC when using USE_GITHUB. 2017-01-03 18:12:13 +00:00
fasttree Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
fastx-toolkit
fluctuate
garlic
gff2ps
gmap Mark various ports as broken on armv6: invokes x86 asm. 2017-02-26 12:56:41 +00:00
gperiodic
grappa
hmmer
htslib
iolib Fix USE_GITHUB's GH_TAGNAME usage. 2017-02-28 08:33:44 +00:00
jalview
jellyfish Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
lagan
lamarc
libgtextutils
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
mopac Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
mrbayes
mummer
muscle
ncbi-blast+ Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
ncbi-toolkit
njplot
p5-AcePerl Move -fPIC to where Linux puts it so it is limited to a single library. 2017-02-13 22:43:58 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics Bump PORTREVISION for ports affected by the fix the last commit. 2017-01-31 16:21:45 +00:00
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-BioPerl - Fix shebangs 2017-04-22 12:45:43 +00:00
p5-BioPerl-Run Bump PORTREVISION for ports affected by the fix the last commit. 2017-01-31 16:21:45 +00:00
p5-transdecoder Never set WRKSRC when using USE_GITHUB. 2017-01-03 18:12:13 +00:00
paml
phrap
phred
phylip
phyml
plink Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
plinkseq biology/plinkseq: unbreak with clang 4.0 2017-02-27 14:09:25 +00:00
primer3
protomol
psi88 Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
py-biom-format
py-biopython
pycogent
pyfasta
python-nexus - Update to 1.42 2017-03-01 07:00:37 +00:00
recombine
ruby-bio
rubygem-bio Update to 1.5.1 2017-02-06 23:03:17 +00:00
samtools
seaview biology/seaview: Update version 4.6=>4.6.1 2017-04-11 18:58:18 +00:00
seqan
seqan1
seqan-apps Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
seqio
seqtools Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
sim4
slclust Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/ 2017-01-20 20:33:30 +00:00
ssaha Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
t_coffee Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
tinker Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
treepuzzle
treeviewx Mark the remaining ports depending on Google Code as DEPRECATED, with an 2017-03-03 16:00:19 +00:00
trimmomatic
tRNAscan-SE
ugene - Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL 2017-01-09 13:16:49 +00:00
vcftools
velvet
wise
xmolwt
Makefile Move devel/rubygem-bio to biology/rubygem-bio 2017-02-05 04:26:56 +00:00