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39 lines
940 B
Makefile
39 lines
940 B
Makefile
PORTNAME= gemma
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DISTVERSION= 0.98.3
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PORTREVISION= 4
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CATEGORIES= biology
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Genome-wide Efficient Mixed Model Association
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WWW= https://github.com/genetics-statistics/GEMMA
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LICENSE= GPLv3
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LICENSE_FILE= ${WRKSRC}/LICENSE
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LIB_DEPENDS= libgsl.so:math/gsl
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USES= blaslapack:openblas compiler:c++11-lang eigen:3 gmake \
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localbase:ldflags
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USE_GITHUB= yes
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GH_ACCOUNT= genetics-statistics
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GH_PROJECT= GEMMA
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MAKEFILE= ${FILESDIR}/Makefile
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# Assuming openblas is built with pthreads, not openmp
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CXXFLAGS+= -I${LOCALBASE}/include/eigen3 -DOPENBLAS -pthread
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LDFLAGS+= -lopenblas -pthread
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OPTIONS_DEFINE= EXAMPLES
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pre-configure:
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@${REINPLACE_CMD} -e 's|../bin/gemma|../gemma|' ${WRKSRC}/test/*.sh
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do-install-EXAMPLES-on:
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@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
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(cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR})
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do-test:
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(cd ${WRKSRC}/test && ${SH} test_suite.sh)
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.include <bsd.port.mk>
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