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ariadne
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artemis
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avida
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mark some of the ports that don't build on powerpc64 for me
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2015-12-13 16:07:27 +00:00 |
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babel
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bcftools
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biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3
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2015-12-25 01:31:09 +00:00 |
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bedtools
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The bedtools utilities are a suite of tools for performing a wide range of
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2016-01-19 08:56:34 +00:00 |
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biococoa
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Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source.
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2015-09-19 10:33:34 +00:00 |
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biojava
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blat
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bowtie
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New port: biology/bowtie.
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2016-03-05 13:21:26 +00:00 |
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bowtie2
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New port: biology/bowtie2.
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2016-03-23 11:22:39 +00:00 |
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bwa
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mark some of the ports that don't build on powerpc64 for me
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2015-12-13 16:07:27 +00:00 |
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cd-hit
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- Update maintainer mail address
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2015-12-11 08:48:56 +00:00 |
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cdbfasta
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- Update maintainer mail address
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2015-12-11 08:48:56 +00:00 |
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chemeq
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clustalw
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consed
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biology/consed: undeprecate, it presumably builds fine but it is restricted.
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2015-12-26 13:26:27 +00:00 |
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crux
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biology/crux is not jobs safe
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2015-12-30 19:49:17 +00:00 |
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emboss
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fasta
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fasta3
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- Update to 36.3.8
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2015-10-16 13:31:10 +00:00 |
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fastdnaml
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Convert LICENSE= "GPLxx # or later" to "GPLxx+"
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2016-01-12 16:20:31 +00:00 |
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fastool
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- Update maintainer mail address
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2015-12-11 08:48:56 +00:00 |
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fasttree
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- Update maintainer mail address
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2015-12-11 08:48:56 +00:00 |
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fastx-toolkit
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- Clarify LICENSE
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2016-03-24 14:12:23 +00:00 |
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fluctuate
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- Switch to options helpers
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2015-11-19 00:51:15 +00:00 |
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garlic
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gff2ps
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Convert LICENSE= "GPLxx # or later" to "GPLxx+"
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2016-01-12 16:20:31 +00:00 |
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gmap
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mark some of the ports that don't build on powerpc64 for me
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2015-12-13 16:07:27 +00:00 |
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gperiodic
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grappa
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biology/grappa: define license (GPLv2)
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2015-09-25 18:55:08 +00:00 |
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hmmer
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- Update maintainer mail address
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2015-12-11 08:48:56 +00:00 |
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htslib
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biology/htslib: Replace FreeBSD-specific fix with a generic one
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2015-12-29 15:05:44 +00:00 |
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iolib
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- Update to 1.14.7
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2016-02-20 16:05:59 +00:00 |
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jalview
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jellyfish
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- Use more appropriate BROKEN instead of IGNORE
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2016-03-29 20:55:48 +00:00 |
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lagan
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Remove deprecated PLIST_DIRSTRY and also no longer needed PLIST_DIRS
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2016-01-09 18:26:40 +00:00 |
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lamarc
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Cleanup GH_* and variables order.
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2015-12-29 14:30:46 +00:00 |
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libgtextutils
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Cleanup GH_* and variables order.
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2015-12-29 14:30:46 +00:00 |
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libsbml
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- Update to 5.12.0
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2016-03-27 07:09:34 +00:00 |
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linux-foldingathome
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mafft
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- Update to 7.266
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2015-12-25 07:19:00 +00:00 |
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mapm3
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biology/mapm3: document ncurses rqmt (USES+=ncurses), respect LDFLAGS
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2016-02-01 22:09:10 +00:00 |
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migrate
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molden
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biology/molden: updated distfile, take maintainer
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2016-01-20 19:31:52 +00:00 |
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mopac
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Convert LICENSE= "GPLxx # or later" to "GPLxx+"
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2016-01-12 16:20:31 +00:00 |
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mrbayes
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mummer
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muscle
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mark some of the ports that don't build on powerpc64 for me
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2015-12-13 16:07:27 +00:00 |
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ncbi-blast+
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Add Public Domain support to ports license framework. You can now use
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2016-01-12 14:33:21 +00:00 |
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ncbi-toolkit
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p5-AcePerl
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Make it so that the default Perl is always called perl5.
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2015-09-14 12:19:48 +00:00 |
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p5-Bio-ASN1-EntrezGene
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p5-Bio-Das
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p5-Bio-Das-Lite
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p5-Bio-GFF3
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Make it so that the default Perl is always called perl5.
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2015-09-14 12:19:48 +00:00 |
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p5-Bio-Glite
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p5-Bio-Graphics
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Make it so that the default Perl is always called perl5.
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2015-09-14 12:19:48 +00:00 |
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p5-Bio-MAGETAB
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p5-Bio-NEXUS
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Make it so that the default Perl is always called perl5.
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2015-09-14 12:19:48 +00:00 |
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p5-Bio-Phylo
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p5-Bio-SCF
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p5-bioperl
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Make it so that the default Perl is always called perl5.
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2015-09-14 12:19:48 +00:00 |
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p5-bioperl-run
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p5-transdecoder
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New port: biology/p5-transdecoder
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2016-03-16 20:12:32 +00:00 |
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paml
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phrap
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phred
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phylip
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phyml
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- Update to 3.2.0
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2016-02-26 13:03:05 +00:00 |
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platon
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- Mark BROKEN: checksum mismatch:
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2015-11-29 03:13:34 +00:00 |
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plink
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- Update maintainer mail address
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2015-12-11 08:48:56 +00:00 |
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plinkseq
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- Update maintainer mail address
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2015-12-11 08:48:56 +00:00 |
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primer3
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protomol
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psi88
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py-biopython
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pycogent
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pyfasta
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python-nexus
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- Update to 1.34
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2016-02-12 13:18:37 +00:00 |
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recombine
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ruby-bio
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mark ports that don't work with Ruby 2.3
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2016-01-17 07:06:25 +00:00 |
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samtools
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biology/samtools: document ncurses requirement (USES+=ncurses)
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2016-02-01 21:59:14 +00:00 |
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seaview
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biology/seaview: Broken, Does not fetch (checksum mismatch)
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2015-11-02 08:14:30 +00:00 |
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seqan
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seqio
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seqtools
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biology/seqtools: 4.40.0 -> 4.41.1
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2016-03-14 19:40:34 +00:00 |
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sim4
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slclust
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New port: biology/slclust.
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2016-03-23 11:00:44 +00:00 |
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ssaha
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t_coffee
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tinker
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treepuzzle
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treeviewx
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Convert LICENSE= "GPLxx # or later" to "GPLxx+"
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2016-01-12 16:20:31 +00:00 |
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trimmomatic
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Trimmomatic performs a variety of useful trimming tasks for illumina
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2016-03-17 08:21:14 +00:00 |
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tRNAscan-SE
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ugene
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vcftools
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New port: biology/vcftools.
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2016-02-26 17:07:59 +00:00 |
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velvet
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wise
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xmolwt
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Makefile
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Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
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2016-03-24 13:53:06 +00:00 |
