Thierry Thomas e2cd1133e6 */*: bump PORTREVISION after the upgrade to OpenBLAS		2024-06-21 19:49:24 +02:00
..
abyss
ad2vcf
artemis
atac-seq
augustus
avida
babel
bamtools
bamutil
barrnap
bbmap
bcf-score
bcftools
bedtools
bfc
bifrost
bio-mocha
bioawk
biococoa
biolibc
biolibc-tools
bioparser
biosig
biosoup
biostar-tools	biology/biostar-tools: Update to 1.11	2024-06-03 06:38:30 -05:00
bolt-lmm	*/*: bump PORTREVISION after the upgrade to OpenBLAS	2024-06-21 19:49:24 +02:00
bowtie
bowtie2
btllib
bwa
canu
cd-hit
cdbfasta
checkm
chip-seq
clustal-omega
clustalw
cufflinks
cytoscape
ddocent
diamond
dsr-pdb
edlib
emboss
erminej
exonerate
fasda
fasta
fasta3
fastahack
fastdnaml
fastool
fastp
fastq-trim
fastqc
fasttree
fastx-toolkit
figtree
flash
fluctuate
freebayes
garlic
gatk
gcta	*/*: bump PORTREVISION after the upgrade to OpenBLAS	2024-06-21 19:49:24 +02:00
gemma	*/*: bump PORTREVISION after the upgrade to OpenBLAS	2024-06-21 19:49:24 +02:00
generand
gff2ps
gffread
gmap
gperiodic
graphlan
groopm
haplohseq
hhsuite
hisat2
hmmer
htslib
hyphy	biology/hyphy: Update to 2.5.62	2024-06-21 13:58:09 -03:00
igv
infernal
iolib
iqtree
jalview
jellyfish
kallisto
kmcp	all: Bump after lang/go121 update	2024-06-15 09:52:17 +00:00
lamarc
libbigwig
libcombine
libgff
libgtextutils
libneurosim
libnuml
libsbml	biology/libsbml: Fix build with libxml2 2.12.0+	2024-06-18 12:05:09 +08:00
libsedml
linux-foldingathome
locarna
mafft
mapm3
mashmap
megahit
metaeuk	biology/metaeuk: update 6 → 7	2024-06-01 01:10:52 -07:00
migrate
minimap2
mmseqs2
molden
mothur
mrbayes
mummer
muscle
ncbi-blast+
ncbi-cxx-toolkit	biology/ncbi-cxx-toolkit: update 28.0.4 → 28.0.5	2024-06-06 01:49:02 -07:00
ncbi-entrez-direct	all: Bump after lang/go121 update	2024-06-15 09:52:17 +00:00
ncbi-toolkit
ncbi-vdb
ngs-sdk
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
peak-classifier
pear-merger
phrap
phred
phyml	biology/phyml: fix build on non-amd64	2024-06-16 17:25:18 +02:00
picard-tools
plink	*/*: bump PORTREVISION after the upgrade to OpenBLAS	2024-06-21 19:49:24 +02:00
pooler
primer3
prodigal
prodigy-lig
protomol
psi88
py-bcbio-gff
py-biom-format
py-biopython
py-biosig
py-bx-python
py-crossmap
py-cutadapt	biology/py-cutadapt: update to 4.9	2024-06-20 10:38:00 +02:00
py-deeptools
py-deeptoolsintervals
py-dna-features-viewer
py-dnaio
py-ete3
py-Genesis-PyAPI
py-gffutils	biology/py-gffutils: update 0.11.1 → 0.13	2024-06-16 18:20:35 -07:00
py-goatools
py-gtfparse
py-hits
py-htseq
py-libnuml
py-libsedml
py-loompy
py-macs2
py-macs3
py-mrcfile
py-multiqc
py-newick
py-ont-fast5-api
py-orange3-bioinformatics
py-orange3-single-cell
py-pandas-charm
py-py2bit
py-pybigwig
py-pyfaidx
py-pyrodigal
py-pysam
py-PySCeS
py-python-libsbml
py-pywgsim	biology/py-pywgsim: fix build	2024-06-07 11:11:35 +03:00
py-resdk
py-scikit-bio	biology/py-scikit-bio: update 0.6.0 → 0.6.1	2024-06-19 02:56:10 -07:00
py-valerius
py-xenaPython
pyfasta
python-nexus
R-cran-Biobase
R-cran-BiocGenerics
R-cran-BiocManager
rainbow
rampler
readseq
rna-seq
ruby-bio
rubygem-bio
rubygem-bio-executables
rubygem-bio-old-biofetch-emulator
rubygem-bio-shell
salmon
sam2pairwise
samtools
scrm
seaview
seqan
seqan1
seqan3
seqan-apps
seqkit	all: Bump after lang/go121 update	2024-06-15 09:52:17 +00:00
seqtk
seqwish
sigviewer
slclust
smithwaterman
snpeff
spoa
sra-tools
stacks
star
stringtie
subread
tabixpp
taxonkit	all: Bump after lang/go121 update	2024-06-15 09:52:17 +00:00
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ucsc-userapps
ugene
unikmer	all: Bump after lang/go121 update	2024-06-15 09:52:17 +00:00
vcf2hap
vcf-split
vcflib
vcftools
velvet
viennarna
vsearch
vt
wfa2-lib
wise
Makefile