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freebsd-ports/science
History
Sunpoet Po-Chuan Hsieh 7f24e27dc8 - Add missing tab in USES=pathfix 
- Add test:
2013-08-21 12:08:40 +00:00
..
2d-rewriter
Convert to USES=imake
2013-06-28 22:25:57 +00:00
2dhf
…
abinit
Rectify USE_TEX to support both of teTeX and TeXLive.
2013-05-11 17:58:55 +00:00
afni
Convert from USE_MOTIF to USES=motif
2013-07-10 07:00:44 +00:00
avogadro
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
bddsolve
…
bft
Upgrade Code_Saturne to 2.0.
2012-07-07 15:15:56 +00:00
bodr
- Convert to new perl framework
2013-08-03 13:44:00 +00:00
brian
- Update to 1.4.1
2013-07-23 03:19:47 +00:00
buddy
…
cdcl
Update to 5.4.7
2012-12-19 03:01:41 +00:00
cdf
…
cdo
- Use USES=gmake
2013-08-21 12:03:51 +00:00
cgnslib
Downgrade to 3.1.4.
2013-07-10 13:40:57 +00:00
checkmol
- worked with upstream to roll versioned source distfile
2013-06-01 05:10:39 +00:00
chemical-mime-data
Adopt, pet portlint a bit and update to new ports features.
2013-07-09 22:06:15 +00:00
chemtool
- update png to 1.5.10
2012-06-01 05:26:28 +00:00
chemtool-devel
Mark jobs unsafe
2013-07-10 13:12:03 +00:00
clhep
…
colt
Decommissioning java 1.5 (EOLed since October 2009):
2012-12-10 13:43:43 +00:00
crf++
…
dcl
Mark jobs unsafe
2013-07-10 11:54:55 +00:00
devisor
Convert NOPORTDOCS -> PORT_OPTIONS:MDOCS.
2013-06-20 13:59:24 +00:00
dlpoly-classic
Convert science to new options framework
2013-04-28 22:08:22 +00:00
dtiquery
…
ecs
WITHOUT_NLS -> PORT_OPTIONS:MNLS
2013-06-04 14:40:29 +00:00
elmer-eio
…
elmer-hutiter
…
elmer-matc
…
elmer-meshgen2d
…
elmergrid
…
elmerpost
…
epte
- Update to 2.0.8
2012-08-06 07:19:41 +00:00
euler
Fix spelling LICENCE -> LICENSE.
2013-06-13 15:30:22 +00:00
fastcap
- Tighten Makefile header and COMMENT
2013-07-28 09:46:15 +00:00
fasthenry
update to 3.0wr-021113
2013-03-28 01:06:02 +00:00
felt
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
flounder
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
fvcom
Add new ports science/fvcom and science/fvcom-mpi:
2013-02-20 17:30:45 +00:00
fvcom-mpi
Add new ports science/fvcom and science/fvcom-mpi:
2013-02-20 17:30:45 +00:00
fvm
Chase french/med upgrade.
2013-03-19 20:35:32 +00:00
g3data
- update png to 1.5.10
2012-06-01 05:26:28 +00:00
gamess
update to 2012/5/1 R2 version.
2013-03-05 11:43:18 +00:00
gchemutils
Update to 0.14.2.
2013-06-27 11:42:57 +00:00
gdis
Fix build with recent binutils
2013-07-26 09:46:53 +00:00
getdp
- forgot to remove a file in the last update.
2012-11-08 00:02:06 +00:00
ghemical
- Convert USE_GETTEXT to USES (part 1)
2013-04-24 07:35:40 +00:00
ghmm
…
gnudatalanguage
Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes.
2013-08-17 16:27:24 +00:00
gramps
gramps installs a .desktop file with a MimeType and registers Mime types
2013-06-24 22:02:02 +00:00
gromacs
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
gsmc
- update png to 1.5.10
2012-06-01 05:26:28 +00:00
gtamsanalyzer
. portlint: remove whitespace before end of line;
2013-06-20 13:06:02 +00:00
gwyddion
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
h5utils
- update png to 1.5.10
2012-06-01 05:26:28 +00:00
harminv
Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes.
2013-08-17 16:27:24 +00:00
hdf
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
hdf5
science/hdf5: Remove h5perf that is missing shared library
2013-07-22 18:17:31 +00:00
hdf5-18
Convert science to new options framework
2013-04-28 22:08:22 +00:00
hdf-java
. remove shlib ABI version numbers from LIB_DEPENDS;
2013-06-20 13:25:04 +00:00
hs-bio
- Update The Glorious Glasgow Haskell Compiler to version 7.6.3
2013-06-04 18:53:40 +00:00
InsightToolkit
Readd specific EXAMPLES description because of specific comment in it
2013-04-29 05:39:52 +00:00
isaac-cfd
. introduce optionsNG;
2013-06-20 16:19:43 +00:00
jmol
Decommissioning java 1.5 (EOLed since October 2009):
2012-12-10 13:43:43 +00:00
jstrack
- update to 3.3.4 (old version isn't fetchable anymore)
2012-11-08 11:40:29 +00:00
kalzium
Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes.
2013-08-17 16:27:24 +00:00
kst2
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
lamprop
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
libctl
- Does not build on 8.3-i386. Does build ok on 9.1-i386.
2013-04-15 17:29:36 +00:00
libghemical
- Convert USE_GETTEXT to USES (part 1)
2013-04-24 07:35:40 +00:00
libint
…
libkml
Fix typos and make small modifications in COMMENT (according to Porter's
2012-08-03 15:54:35 +00:00
liblinear
Convert science to new options framework
2013-04-28 22:08:22 +00:00
liboglappth
This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix.
2013-03-19 13:04:30 +00:00
libquantum
…
libsvm
Convert science to new options framework
2013-04-28 22:08:22 +00:00
libsvm-python
…
linsmith
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
massxpert
- Changed my email
2013-07-22 14:34:22 +00:00
mayavi
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-20 14:05:24 +00:00
mbdyn
Convert science to new options framework
2013-04-28 22:08:22 +00:00
mcstas
Fix with bmake(1)
2013-05-03 08:17:33 +00:00
medit
Fix build with clang.
2013-06-12 20:03:25 +00:00
meep
Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes.
2013-08-17 16:27:24 +00:00
mei
MEI stands for Mathematical Expression Interpreter.
2012-07-07 15:15:08 +00:00
minc
Update to version 1.5.1 [1]
2012-07-20 16:32:07 +00:00
minc2
Upgrade to 2.2.00.
2013-07-10 13:59:11 +00:00
mol2ps
- Update to 0.4a
2013-07-22 15:28:03 +00:00
mpb
. add license (GPLv2);
2013-06-20 13:35:33 +00:00
mpqc
Rectify USE_TEX to support both of teTeX and TeXLive.
2013-05-11 17:58:55 +00:00
mpqc-mpich
…
ncs
Rectify USE_TEX to support both of teTeX and TeXLive.
2013-05-11 17:58:55 +00:00
netcdf
Convert science to new options framework
2013-04-28 22:08:22 +00:00
netcdf3-ftn
…
netcdf4
- Add missing tab in USES=pathfix
2013-08-21 12:08:40 +00:00
netcdf-ftn
…
nifticlib
- Try to unbreak parallel builds (-jX)
2013-07-28 08:32:18 +00:00
omnetpp
Convert science to new options framework
2013-04-28 22:08:22 +00:00
openbabel
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
ovt
Decommissioning java 1.5 (EOLed since October 2009):
2012-12-10 13:43:43 +00:00
p5-Algorithm-SVMLight
- Convert to new perl framework
2013-08-02 18:52:07 +00:00
p5-Chemistry-3DBuilder
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-Bond-Find
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-Canonicalize
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-Elements
- Convert to new perl framework
2013-08-02 18:52:07 +00:00
p5-Chemistry-File-MDLMol
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-File-Mopac
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-File-PDB
- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or
2012-06-10 18:42:48 +00:00
p5-Chemistry-File-SLN
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-File-SMARTS
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-File-SMILES
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-File-VRML
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-File-XYZ
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-FormulaPattern
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-InternalCoords
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-Isotope
…
p5-Chemistry-MacroMol
- Convert to new perl framework
2013-08-02 18:52:07 +00:00
p5-Chemistry-MidasPattern
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-Mok
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-Mol
- Convert to new perl framework
2013-08-02 18:52:07 +00:00
p5-Chemistry-Pattern
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-Reaction
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-Ring
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Geo-BUFR
- Convert to new perl framework
2013-08-02 18:52:07 +00:00
p5-Geo-Coordinates-Converter
- Convert to new perl framework
2013-08-02 18:52:07 +00:00
p5-Geo-Coordinates-Converter-iArea
…
p5-Geo-ReadGRIB
- Convert to new perl framework
2013-08-06 08:50:49 +00:00
p5-Geo-WebService-Elevation-USGS
- Convert to new perl framework
2013-08-02 18:52:07 +00:00
p5-PerlMol
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Physics-Unit
- Update to 0.53
2012-05-26 07:29:57 +00:00
paje
. portlint: use tab (not space) to make indentation;
2013-06-20 13:43:03 +00:00
paraview
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
peekabot
Replace USE_GCC=4.6+ and USE_GCC=4.4+ by USE_GCC=yes.
2013-08-17 16:27:24 +00:00
pnetcdf
- Use USES=gmake
2013-08-21 12:03:51 +00:00
psi3
- Fix all cases of 'No newline at end of file' in ports tree
2013-02-01 15:04:00 +00:00
psychopy
- Update to 1.77.00
2013-05-16 13:04:09 +00:00
py-coards
Clean up.
2013-06-16 08:29:46 +00:00
py-DendroPy
Update to 3.12.0
2012-07-18 06:21:15 +00:00
py-h5py
science/py-h5py: Add OPTION support for HDF5 1.8
2013-08-13 11:59:54 +00:00
py-hcluster
- update png to 1.5.10
2012-06-01 05:26:28 +00:00
py-mdp
- Update to 3.2
2012-08-08 21:27:15 +00:00
py-mlpy
…
py-netCDF4
- Update to 1.0.5
2013-08-21 02:49:33 +00:00
py-obspy
- Update COMMENT and pkg-descr
2013-07-18 23:56:55 +00:00
py-paida
- Update *_DEPENDS on x11-toolkits/py-tkinter after _tkinter.so relocation
2013-03-02 22:32:48 +00:00
py-pydicom
Fix typos and make small modifications in COMMENT (according to Porter's
2012-08-03 15:54:35 +00:00
py-scikit-learn
Update to version 0.13.1.
2013-03-11 14:11:26 +00:00
py-scimath
- Update to 4.1.2
2013-07-23 04:27:27 +00:00
py-scipy
- Take maintainership
2013-08-21 01:03:00 +00:00
py-ws2300
- Update to 1.7 [1]
2012-12-09 13:19:39 +00:00
pybrain
…
pycdf
…
pynn
- Update to 0.7.5
2013-03-02 05:49:40 +00:00
pyteomics
- Update to 2.1.5 and [1]:
2013-05-11 07:42:20 +00:00
pyteomics.biolccc
Allow to build with python3
2013-05-11 07:41:46 +00:00
qcl
…
qtresistors
- Changed my email
2013-07-22 14:34:22 +00:00
R-cran-AMORE
Update math/R to 3.0.1-patched, and adjust dependent ports;
2013-05-28 15:15:05 +00:00
R-cran-bayesm
Update math/R to 3.0.1-patched, and adjust dependent ports;
2013-05-28 15:15:05 +00:00
R-cran-DCluster
Update math/R to 3.0.1-patched, and adjust dependent ports;
2013-05-28 15:15:05 +00:00
R-cran-e1071
Update math/R to 3.0.1-patched, and adjust dependent ports;
2013-05-28 15:15:05 +00:00
R-cran-eco
Update math/R to 3.0.1-patched, and adjust dependent ports;
2013-05-28 15:15:05 +00:00
R-cran-Epi
Update math/R to 3.0.1-patched, and adjust dependent ports;
2013-05-28 15:15:05 +00:00
R-cran-epicalc
Update math/R to 3.0.1-patched, and adjust dependent ports;
2013-05-28 15:15:05 +00:00
R-cran-snow
Update math/R to 3.0.1-patched, and adjust dependent ports;
2013-05-28 15:15:05 +00:00
R-cran-som
Update math/R to 3.0.1-patched, and adjust dependent ports;
2013-05-28 15:15:05 +00:00
ruby-dcl
- Update to 1.7.0.
2012-07-25 01:23:45 +00:00
ruby-gphys
- Update to 1.2.2
2013-01-22 03:31:11 +00:00
ruby-netcdf
…
rubygem-ai4r
- Reset maintainer after no response to mail since Jan 2013
2013-07-27 16:06:01 +00:00
silo
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
simlib
…
step
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
svmlight
…
szip
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
2013-06-20 13:01:27 +00:00
udunits
- Remove MAKE_JOBS_SAFE variable
2013-08-14 22:35:50 +00:00
v_sim
- Correct DOCS handling
2013-06-14 12:00:22 +00:00
veusz
- Update to 1.17.1
2013-06-19 13:53:12 +00:00
vmd
Fix minor nit: use the canconical FreeBSD.org form for email addresses.
2013-03-17 16:44:03 +00:00
voro++
- add new port: science/voro++
2013-04-16 22:46:18 +00:00
x11iraf
Register CONFLICTS
2012-06-11 09:52:17 +00:00
xfce4-equake-plugin
Unbreak with clang
2013-08-02 17:34:39 +00:00
xmakemol
Convert from USE_MOTIF to USES=motif
2013-07-10 07:00:44 +00:00
xmds
Convert science to new options framework
2013-04-28 22:08:22 +00:00
Makefile
KDE3 and QT3 expired on 2013-07-01, remove these ports.
2013-07-26 19:19:20 +00:00