| .. |
|
adun
|
LICENSE GPLv2
|
2010-06-05 19:53:32 +00:00 |
|
ariadne
|
|
|
|
artemis
|
|
|
|
avida
|
Also broken on sparc64 (and, by implication, ia64).
|
2010-09-17 09:17:05 +00:00 |
|
babel
|
Mark various ports as broken or ignore on powerpc.
|
2010-04-01 05:16:19 +00:00 |
|
belvu
|
|
|
|
biococoa
|
LICENSE LGPL21
|
2010-06-05 06:14:28 +00:00 |
|
biojava
|
|
|
|
blast
|
- SUB_FILES += pkg-message
|
2010-01-09 23:51:26 +00:00 |
|
blat
|
|
|
|
boinc-simap
|
- Update the libmap instructions for amd64/8
|
2010-07-29 08:30:24 +00:00 |
|
chemeq
|
|
|
|
clustalw
|
- Fix fetch
|
2010-12-21 00:12:22 +00:00 |
|
consed
|
|
|
|
crimap
|
- actually remove old patch
|
2010-01-17 00:16:34 +00:00 |
|
crux
|
|
|
|
distribfold
|
|
|
|
dna-qc
|
BROKEN should not be quoted.
|
2010-06-13 08:40:06 +00:00 |
|
dotter
|
- Removed BROKEN because file fetches and checksums correctly
|
2010-04-28 22:37:11 +00:00 |
|
embassy
|
- Update to 6.2.0
|
2010-04-07 01:21:36 +00:00 |
|
emboss
|
Sync to new bsd.autotools.mk
|
2010-12-04 07:34:27 +00:00 |
|
fasta
|
Mark various ports as broken or ignore on powerpc.
|
2010-04-01 05:16:19 +00:00 |
|
fasta3
|
|
|
|
fastdnaml
|
|
|
|
finchtv
|
|
|
|
fluctuate
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
|
garlic
|
|
|
|
genpak
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
gff2ps
|
|
|
|
gmap
|
- fix fetch: wget is not required for fetching
|
2010-12-12 08:10:05 +00:00 |
|
gperiodic
|
Bounce PORTREVISION for gettext-related ports. Have fun, ya'll.
|
2010-05-31 02:01:56 +00:00 |
|
grappa
|
|
|
|
hmmer
|
|
|
|
iolib
|
Sync to new bsd.autotools.mk
|
2010-12-04 07:34:27 +00:00 |
|
jalview
|
|
|
|
kinemage
|
|
|
|
L-Breeder
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
lagan
|
- Unbreak build: CPP is now part of MAKE_ENV
|
2010-11-08 15:05:11 +00:00 |
|
lamarc
|
- Update to 2.1.5
|
2010-08-04 06:30:07 +00:00 |
|
libgenome
|
Sync to new bsd.autotools.mk
|
2010-12-04 07:34:27 +00:00 |
|
libsbml
|
- Update to 4.2.0
|
2010-10-08 02:06:53 +00:00 |
|
linux-foldingathome
|
Improve port description.
|
2010-11-29 08:17:34 +00:00 |
|
lsysexp
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
mafft
|
|
|
|
mapm3
|
- Mark MAKE_JOBS_UNSAFE
|
2009-11-20 22:53:09 +00:00 |
|
migrate
|
- Add an additional MASTER_SITES
|
2010-10-01 01:06:46 +00:00 |
|
molden
|
|
|
|
mopac
|
Sync to new bsd.autotools.mk
|
2010-12-04 07:34:27 +00:00 |
|
mrbayes
|
|
|
|
mummer
|
- Update to 3.22
|
2010-03-21 17:18:20 +00:00 |
|
muscle
|
|
|
|
ncbi-toolkit
|
- use $SUB_FILES to dynamically adjust pkg-message
|
2010-01-31 03:42:20 +00:00 |
|
njplot
|
|
|
|
ortep3
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
|
p5-AcePerl
|
- Remove unneeded dependencies which is in perl-5.8.9 dist
|
2010-01-29 14:52:21 +00:00 |
|
p5-Bio-ASN1-EntrezGene
|
|
|
|
p5-Bio-Das
|
Change dependency on old p5-Compress-Zlib, p5-IO-Compress-Base,
|
2010-09-21 07:56:43 +00:00 |
|
p5-Bio-Das-Lite
|
- Update to 2.10
|
2010-11-04 06:24:22 +00:00 |
|
p5-Bio-Glite
|
- Remove unneeded dependencies which is in perl-5.8.9 dist
|
2010-01-29 14:52:21 +00:00 |
|
p5-Bio-Graphics
|
- Update to 2.18
|
2010-12-23 06:37:08 +00:00 |
|
p5-Bio-MAGETAB
|
- Update to 1.13
|
2010-09-07 07:00:17 +00:00 |
|
p5-Bio-NEXUS
|
- Use canonical format for FreeBSD.org MAINTAINER addresses
|
2010-12-25 16:55:41 +00:00 |
|
p5-Bio-Phylo
|
- Update to 0.34
|
2010-12-23 06:33:33 +00:00 |
|
p5-Bio-SCF
|
- Update to 1.03
|
2010-01-09 01:21:21 +00:00 |
|
p5-bioperl
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
p5-bioperl-run
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
paml
|
- Update to 4.4c
|
2010-09-08 00:16:45 +00:00 |
|
phd2fasta
|
|
|
|
phrap
|
|
|
|
phred
|
|
|
|
phylip
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
|
phyml
|
Sync to new bsd.autotools.mk
|
2010-12-04 07:34:27 +00:00 |
|
platon
|
- Fix fetch
|
2011-01-24 21:17:30 +00:00 |
|
povchem
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
primer3
|
- DISTNAME= ${PORTNAME}-${PORTVERSION} is the default and not needed.
|
2010-12-29 20:04:42 +00:00 |
|
protomol
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
psi88
|
|
|
|
py-biopython
|
- Update to 1.54
|
2010-07-02 02:57:19 +00:00 |
|
pycogent
|
- Update to 1.5.0
|
2010-11-10 08:52:26 +00:00 |
|
pyfasta
|
- Update to 0.4.1
|
2010-12-02 13:42:09 +00:00 |
|
pymol
|
Update to 1.3r1.3913.
|
2010-09-16 21:48:04 +00:00 |
|
python-nexus
|
- Update to 0.7
|
2010-02-24 01:30:46 +00:00 |
|
rasmol
|
|
|
|
recombine
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
|
ruby-bio
|
- Fix pkg-plist, got the wrong version before
|
2010-12-30 23:08:47 +00:00 |
|
seaview
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
seqio
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
|
sim4
|
|
|
|
ssaha
|
|
|
|
t_coffee
|
|
|
|
tinker
|
- Unbreak by removing some old and adding some new master sites
|
2010-10-30 23:51:30 +00:00 |
|
treepuzzle
|
|
|
|
treeviewx
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
tRNAscan-SE
|
|
|
|
velvet
|
|
|
|
wise
|
Fix plist.
|
2010-11-16 23:55:41 +00:00 |
|
xdrawchem
|
- update to 1.4.1
|
2010-03-28 06:47:48 +00:00 |
|
xmolwt
|
|
|
|
Makefile
|
p5-Bio-Das-Lite is an implementation of a client for the DAS protocol (XML
|
2010-03-01 09:16:25 +00:00 |
