1
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mirror of https://git.FreeBSD.org/ports.git synced 2024-10-18 19:49:40 +00:00
freebsd-ports/science
2022-07-14 07:46:05 -05:00
..
2d-rewriter
abinit */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
afni science/afni: update to 22.1.14 2022-06-28 07:22:58 +02:00
agrum science/agrum: Update 1.1.0 -> 1.1.1 2022-06-11 13:29:59 -07:00
aircraft-datcom
ALPSCore */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
antioch math/gsl: bump portrevision of consumers after update to 2.7.1 2022-01-12 20:41:22 +01:00
apbs
ascent */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
atompaw science/atompaw: Update 4.2.0.0 -> 4.2.0.1 2022-06-13 20:26:14 -07:00
avogadro2 science/avogadro2: Update 1.94.0 -> 1.95.1 2022-02-05 01:44:22 -08:00
avogadrolibs */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
axom */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
bagel science/bagel: Update 1.2.2 -> 1.2.2-132 2022-06-23 00:39:22 -07:00
bddsolve devel/boost-all: bump all library consumers after boost upgrade 2022-05-22 23:17:16 +03:00
berkeleygw science/berkeleygw: Update 2.0.0 -> 3.0.1 2022-05-20 22:25:01 -07:00
bodr
buddy
cantera science/cantera: Minor simplification 2022-06-29 01:21:31 -07:00
cdcl
cdf *: Clean up some things 2022-01-17 14:20:25 +01:00
cdk science/cdk: Update 2.3 -> 2.7.1 2022-06-03 09:49:16 -07:00
cdo */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
cgnslib */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
cgribex */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
checkmol lang/fpc: Fix build issues building some fpc based apps 2022-06-20 20:17:20 -05:00
chemical-mime-data textproc/libxml2: bump all LIB_DEPENDS consumers 2022-04-10 15:11:41 -04:00
chemicalfun science/chemicalfun: New port: C++ library for working with chemical reactions and formulas 2022-01-18 10:42:45 -08:00
chemps2 */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
chemtool
chemtool-devel
chimes-calculator science/chimes-calculator: New port: Chebyshev Interaction Model for Efficient Simulation 2022-01-18 23:05:13 -08:00
ChipmunkPhysics devel/ChipmunkPhysics: Move to science/ChipmunkPhysics 2022-07-13 00:19:38 -07:00
chrono */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
clhep
clipper
code_saturne science/code_saturne: upgrade to 7.1.1 2022-04-26 22:46:44 +02:00
colt
conduit */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
coordgenlibs
cp2k science/cp2k: Update 9.1.0 -> 2022.1 2022-07-11 21:10:08 -07:00
cp2k-data science/cp2k-data: Update 9.1.0 -> 2022.1 2022-07-11 21:10:07 -07:00
crf++
csvtk all: Bump PORTREVISION after lang/go{117,118} update 2022-07-14 07:46:05 -05:00
dakota science/dakota: Fix LIB_DEPENDS after science/szip removal 2022-06-17 03:57:52 +08:00
dalton
dcl
devisor
dftbplus science/dftbplus: unbreak on powerpc* / main 2022-07-04 02:00:33 +02:00
dftd4 science/dftd4: Update 3.3.0 -> 3.4.0 2022-04-30 12:48:30 -07:00
dkh
dlib-cpp
drawxtl
dvc
dynare */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
eccodes science/eccodes: Update to 2.26.0 2022-06-03 17:00:25 +08:00
elk science/elk: Update 8.4.21 -> 8.4.30 2022-07-05 15:30:25 -07:00
elmerfem science/elmerfem: Fix build with GCC 11 2022-05-06 15:01:10 +02:00
epte
erd
ergo Fix CONFLICTS entries of multiple ports 2022-01-10 16:15:39 +01:00
erkale */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
erkale-pseudopotentials science/erkale{,-pseudopotentials}: Update g20200426 -> g20220405 2022-05-24 12:51:17 -07:00
fastcap
fasthenry
fastjet science/fastjet: Fix CGAL option; Add tests 2022-07-07 10:16:49 -07:00
fisicalab math/gsl: bump portrevision of consumers after update to 2.7.1 2022-01-12 20:41:22 +01:00
fleur textproc/libxml2: bump all LIB_DEPENDS consumers 2022-04-10 15:11:41 -04:00
frontistr
fsom
fvcom science/netcdf-fortran: Update to 4.5.4 2022-03-08 02:10:59 +08:00
fvcom-mpi *: Clean up some things 2021-10-12 17:01:38 +02:00
gabedit INSTALLS_ICONS: retire the macro and rework the related dependencies 2021-10-10 21:44:42 +02:00
gamess-us
gbtolib science/gbtolib: New port: High-performance library for evaluation of molecular integrals 2022-05-24 17:02:33 -07:00
gchemutils textproc/libxml2: bump all LIB_DEPENDS consumers 2022-04-10 15:11:41 -04:00
gdma
getdp devel/cmake: Update to 3.23.0 2022-05-16 08:49:43 +02:00
ghemical science/ghemical: Fix path to mopac port 2022-06-19 09:02:23 -07:00
ghmm textproc/libxml2: bump all LIB_DEPENDS consumers 2022-04-10 15:11:41 -04:00
gnudatalanguage */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
gpaw-setups
gramps science/gramps: remove option for expired py-bsddb3 2022-07-02 11:31:15 +02:00
grib_api graphics/jasper: Bump PORTREVISION of dependent ports for shlib change after cdcedd316d 2022-04-17 04:55:37 +08:00
gromacs science/gromacs: Change WWW to https 2022-07-06 23:45:25 -07:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
hdf5 science/hdf5: Sort PLIST 2022-06-16 23:27:43 +08:00
hdf5-18 */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
healpix astro/cfitsio: Update to 4.0.0 2022-02-28 23:06:56 +08:00
helfem science/helfem: Fix build with clang-14 2022-06-24 12:29:39 -07:00
hepmc3 science/hepmc3: Update 3.2.4 -> 3.2.5 2022-05-12 11:57:53 -07:00
highfive science/highfive: Update 2.4.0 -> 2.4.1 2022-05-12 11:57:51 -07:00
hypre science/hypre: Update 2.24.0 -> 2.25.0 2022-06-16 21:03:50 -07:00
iboview
InsightToolkit */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
isaac-cfd
jdftx science/jdftx: Update 1.6.0 -> 1.7.0 2022-01-29 09:24:02 -08:00
jmol science/jmol: Update 14.32.62 -> 14.32.63 2022-07-11 18:24:29 -07:00
jstrack
kalzium KDE: Update KDE Gear to 22.04.3 2022-07-07 23:49:42 +02:00
kim-api science/kim-api: Update 2.2.1 -> 2.3.0 2022-03-19 18:18:45 -07:00
kst2 science/kst2: Fix build with newer HDF5 (1.10.8+ or 1.12.1+) 2022-07-07 20:36:28 +08:00
lammps science/lammps: Fix MPI option; Change VTK option to use VTK-9.1 2022-06-28 10:53:36 -07:00
lamprop
latte
libaec science/libaec: Update to 1.0.6 2021-09-28 03:48:08 +08:00
libccp4
libcint science/libcint: Update 5.1.2 -> 5.1.3 2022-06-16 11:24:43 -07:00
libctl
libecpint science/libecpint: Update 1.0.6 -> 1.0.7 2021-12-14 14:41:53 -08:00
libefp
libgeodecomp science/libgeodecomp: mark as BROKEN after recent boost upgrade 2022-05-22 23:17:12 +03:00
libgetar science/libgetar: New port: Library to read and write GEneric Trajectory ARchives 2022-06-27 10:58:02 -07:00
libghemical science/libghemical: Remove LD_PRELOAD vecause it configured now without it 2021-09-26 10:43:55 -07:00
libgridxc
libint
libint2 science/libint2: Update 2.7.1 -> 2.7.2 2022-06-26 00:20:17 -07:00
libkml devel/googletest: update to 1.12.1 2022-06-30 15:27:20 +00:00
liblinear science/liblinear: Update to 2.44 2022-03-31 06:03:39 +08:00
libmbd science/libmbd: New port: Many-body dispersion library 2022-01-16 21:15:11 -08:00
libmsym
libnegf science/libnegf: Update 1.0.3 -> 1.1.2 2022-05-18 13:51:37 -07:00
liboglappth *: fix tab vs. space issues, and comments according to the guide. 2021-10-16 11:51:39 +02:00
libquantum
libssm
libsvm *: Clean up some things 2021-10-12 17:01:38 +02:00
libsvm-python
libtensorflow1 science/libtensorflow1: disallow newer Bazel 2022-06-12 21:01:13 +01:00
libvdwxc
libxc science/libxc: Update 5.1.7 -> 5.2.3 2022-05-24 10:30:13 -07:00
liggghts science/liggghts: Update 3.8.0-26 -> 3.8.0-45 2022-06-28 09:48:28 -07:00
linux-zotero science/linux-zotero: Clean up 2021-11-08 00:33:54 +01:00
luscus
madness
maeparser devel/boost-all: bump all library consumers after boost upgrade 2022-05-22 23:17:16 +03:00
massxpert science/massxpert: Improve port 2022-05-19 21:38:15 +02:00
mbdyn science/mbdyn: fix build on powerpc64* 2021-11-08 15:52:33 +00:00
mcstas
mcstas-comps
mctc-lib science/mctc-lib: Update 0.2.5 -> 0.3.0 2022-04-19 20:40:01 -07:00
mcxtrace */*: fix trailing whitespace in pkg-descr's 2022-04-01 18:09:49 +03:00
mcxtrace-comps
mdynamix */*: fix trailing whitespace in pkg-descr's 2022-04-01 18:09:49 +03:00
medit
metaphysicl science/metaphysicl: Update 1.3.2 -> 1.3.3 2021-12-13 09:19:09 -08:00
minc2 science/netcdf: Update to 4.8.1 2022-03-08 02:10:58 +08:00
mmdb2 science/mmdb2: Update 2.0.20 -> 2.0.22 2022-04-30 09:03:26 -07:00
mmtf-cpp
mol2ps lang/fpc: Fix build issues building some fpc based apps 2022-06-20 20:17:20 -05:00
molgif all: Bump PORTREVISION after lang/go{117,118} update 2022-07-14 07:46:05 -05:00
molscript
molsketch
mopac biology/mopac: Move to science/mopac; Add TIMESTAMP to distinfo; Take maintainership 2022-06-19 00:52:28 -07:00
mpb
mpqc science/mpqc: regen plist after doxygen update (+) 2021-12-16 11:49:52 +03:00
msms Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.) 2021-10-25 12:58:29 +00:00
mstore */*: In 7 ports remove GNU-10.3.0 from install paths 2022-01-18 12:12:05 -08:00
multicharge science/multicharge: Update 0.1.2 -> 0.2.0 2022-05-05 23:21:10 -07:00
multiwfn
namd Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.) 2021-10-25 12:58:29 +00:00
nest science/nest: remove redundant USES=compiler 2022-05-31 03:06:02 +00:00
netcdf science/netcdf: Update to 4.9.0 2022-06-22 04:57:22 +08:00
netcdf-cxx science/netcdf-cxx: Update MASTER_SITES 2022-03-08 02:10:59 +08:00
netcdf-fortran science/netcdf-fortran: Update to 4.5.4 2022-03-08 02:10:59 +08:00
nifticlib */*: Remove redundant '-[0-9]*' from CONFLICTS 2021-10-29 11:50:18 +02:00
nwchem science/nwchem: Update 7.0.2.20211110 -> 7.0.2.20220224 2022-02-25 10:19:33 -08:00
nwchem-data
octopus science/octopus: Cosmetic changes 2022-05-31 02:12:09 -07:00
openbabel devel/boost-all: bump all library consumers after boost upgrade 2022-05-22 23:17:16 +03:00
openems science/openems: Update 0.0.35-71 -> 0.0.35-76 2022-06-26 14:37:35 -07:00
openkim
openkim-models science/openkim-models: Update 2021-01-28 -> 2021-08-11 2022-05-08 11:02:07 -07:00
openmc */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
openmolcas */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
openmx
opensim-core
opensph misc/openvdb: Update 9.0.0 -> 9.1.0 2022-06-11 13:29:59 -07:00
opsin
orthanc devel/googletest: update to 1.12.1 2022-06-30 15:27:20 +00:00
orthanc-dicomweb devel/boost-all: bump all library consumers after boost upgrade 2022-05-22 23:17:16 +03:00
orthanc-mysql devel/boost-all: bump all library consumers after boost upgrade 2022-05-22 23:17:16 +03:00
orthanc-postgresql devel/boost-all: bump all library consumers after boost upgrade 2022-05-22 23:17:16 +03:00
orthanc-webviewer devel/boost-all: bump all library consumers after boost upgrade 2022-05-22 23:17:16 +03:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements science/p5-Chemistry-Elements: Update to 1.075 2021-11-06 03:15:55 +08:00
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-WebService-Elevation-USGS science/p5-Geo-WebService-Elevation-USGS: Update to 0.120 2021-11-06 03:15:56 +08:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2 devel/boost-all: bump all library consumers after boost upgrade 2022-05-22 23:17:16 +03:00
paje
paraview science/paraview: unbreak after the upgrade of science/netcdf 2022-07-03 14:48:43 +02:00
pastix science/pastix: adding PaStiX, a sparse direct solver 2022-04-23 18:41:10 +02:00
pcmsolver science/pcmsolver: Small fixes 2022-05-20 21:35:33 -07:00
PETSc science/PETSc: Update 3.14.1 -> 3.16.3 2022-01-07 00:34:46 -08:00
phonopy science/phonopy: Update 2.15.0 -> 2.15.1 2022-05-28 21:52:24 -07:00
plumed science/plumed: Use upsteam release archive 2022-05-23 13:39:54 +02:00
pnetcdf
precice science/precice: Add options; Backport patch provided by upstream 2022-06-21 14:02:33 -07:00
pulseview all: return bsam's ports to the pool after his commit bit got safekept 2022-06-06 13:19:04 +02:00
py-abipy
py-access science/py-access: Update to 1.1.8 2022-06-09 18:59:16 +08:00
py-asap3 science/py-asap3: Fix python suffix in shared library name 2022-06-29 01:17:56 -07:00
py-asdf science/py-asdf: Update to 2.12.0 2022-06-09 18:59:17 +08:00
py-asdf-standard science/py-asdf-standard: Update to 1.0.2 2022-04-18 07:58:22 +08:00
py-asdf-transform-schemas science/py-asdf-standard: Update to 1.0.2 2022-04-18 07:58:22 +08:00
py-ase science/py-ase: Add test target 2022-06-19 03:01:29 -07:00
py-avogadrolibs science/py-avogadrolibs: Update 1.94.0 -> 1.95.1 2022-02-05 01:44:22 -08:00
py-cdo science/py-cdo: Update to 1.5.6 2022-01-24 02:50:47 +08:00
py-chainer devel/protobuf: Update to 3.20.0 2022-04-16 12:19:07 +08:00
py-chainer-chemistry
py-chempy science/py-chempy: switch to USES=pytest, fix tests and document failing ones 2022-04-26 20:26:11 +03:00
py-cirq-aqt science/py-cirq-*: Update 0.14.1 -> 0.15.0 2022-07-01 01:44:59 -07:00
py-cirq-core science/py-cirq-*: Update 0.14.1 -> 0.15.0 2022-07-01 01:44:59 -07:00
py-cirq-google science/py-cirq-*: Update 0.14.1 -> 0.15.0 2022-07-01 01:44:59 -07:00
py-cirq-ionq science/py-cirq-*: Update 0.14.1 -> 0.15.0 2022-07-01 01:44:59 -07:00
py-cirq-pasqal science/py-cirq-*: Update 0.14.1 -> 0.15.0 2022-07-01 01:44:59 -07:00
py-cirq-rigetti science/py-cirq-rigetti: New port: Cirq module to run on Rigetti quantum computers 2022-07-01 18:55:15 -07:00
py-coards
py-DendroPy science/py-DendroPy: Update to 4.5.2 2022-06-05 15:43:08 +08:00
py-dipy science/py-dipy: Update 1.4.1 -> 1.5.0 2022-04-24 12:42:21 -07:00
py-dlib
py-eccodes science/py-eccodes: Update to 1.4.2 2022-05-22 12:37:30 +08:00
py-esda science/py-esda: Add SHAPE option 2021-09-21 11:44:54 +08:00
py-fresnel math/qhull: Renaming ports 2022-02-18 15:15:30 -06:00
py-geolinks
py-geomet
py-geometer science/py-geometer: Revert d68b12c0a6 2022-07-07 20:36:18 +08:00
py-geometric
py-gpaw science/py-gpaw: Update 21.6.0 -> 22.1.0 2022-01-13 02:25:40 -08:00
py-GPy
py-GPyOpt
py-gsd science/py-gsd: Update 2.5.1 -> 2.5.2 2022-04-19 18:08:13 -07:00
py-h5json
py-h5py science/py-h5py: Convert to USE_PYTHON=pytest 2022-06-04 00:57:26 +08:00
py-hiphive science/py-hiphive: Update 1.0 -> 1.1 2022-05-07 10:11:29 -07:00
py-hoomd-blue science/py-hoomd-blue: Update 3.1.0 -> 3.2.0 2022-05-19 19:10:19 -07:00
py-inequality science/py-inequality: Update USES=python 2021-11-06 03:14:23 +08:00
py-jupyter_jsmol science/py-jupyter_jsmol: switch to USES=pytest, fix testing 2022-04-26 16:45:58 +03:00
py-kim-query science/py-kim-query: Update 1.1.0 -> 3.0.0 2022-05-08 11:02:07 -07:00
py-kinematics science/py-kinematics: Update USES=python 2021-11-06 03:14:24 +08:00
py-kliff science/py-kliff: Update 0.3.3 -> 0.4.0 2022-04-29 12:40:02 -07:00
py-liac-arff
py-libgetar science/py-libgetar: Fix tests 2022-06-27 15:39:42 -07:00
py-libpysal science/py-libpysal: Update to 4.6.2 2022-03-25 21:37:13 +08:00
py-lifelines
py-MDAnalysis science/py-MDAnalysis*: upgrade to 2.2.0 2022-06-21 19:26:21 +02:00
py-MDAnalysisTests science/py-MDAnalysis*: upgrade to 2.2.0 2022-06-21 19:26:21 +02:00
py-mdp science/py-mdp: Fix build with setuptools 58.0.0+ 2022-03-25 21:38:19 +08:00
py-mmtf-python
py-molmod
py-moltemplate science/py-moltemplate: Update 2.20.5 -> 2.20.6 2022-07-01 15:41:38 -07:00
py-netCDF4 science/netcdf: Update to 4.8.1 2022-03-08 02:10:58 +08:00
py-netcdf-flattener
py-nibabel science/py-nibabel: Update 3.2.1 -> 3.2.2 2022-04-24 12:42:19 -07:00
py-nilearn science/py-nilearn: mark BROKEN 2022-03-23 14:44:26 +03:00
py-obspy science/py-obspy: Update to 1.3.0 2022-03-14 12:14:38 +08:00
py-oddt science/py-oddt: Not install tests 2022-03-25 10:28:34 -07:00
py-OpenFermion science/py-OpenFermion: Update 1.2.0 -> 1.3.0 2021-12-23 17:54:58 -08:00
py-OpenMC science/{,py-}openmc: Update 0.12.2 -> 0.13.0 2022-05-08 13:55:59 -07:00
py-openpiv science/py-openpiv: update to 0.23.8 2021-11-06 00:17:44 +03:00
py-paida science/py-paida: Fix build with setuptools 58.0.0+ 2022-03-25 21:38:19 +08:00
py-paramz
py-phono3py
py-phonopy science/py-phonopy: Update 2.14.0 -> 2.15.1 2022-06-05 23:31:07 -07:00
py-PubChemPy
py-pupynere science/py-pupynere: Update USES=python 2021-11-06 03:14:24 +08:00
py-py3Dmol science/py-py3Dmol: New port: IPython interface for embedding 3Dmol.js views 2022-06-15 13:56:03 -07:00
py-pyaixi
py-pyberny science/py-pyberny: New port: Optimizer of molecular geometries with respect to the total energy 2021-10-16 16:56:19 -07:00
py-pycsw science/py-pycsw: Update to 2.6.1 2021-10-25 23:57:35 +08:00
py-pydicom science/py-pydicom: Update to 2.3.0 2022-04-07 11:41:06 +00:00
py-PyFR science/py-PyFR: Update 1.13.0 -> 1.14.0 2022-05-05 23:21:10 -07:00
py-pygeodesy science/py-pygeodesy: Add GitHub to MASTER_SITES 2022-07-12 05:47:05 +08:00
py-pygeometa science/py-pygeometa: Update to 0.11.1 2022-06-22 00:36:23 +08:00
py-pygmo2 devel/boost-all: bump all library consumers after boost upgrade 2022-05-22 23:17:16 +03:00
py-pyked devel/py-pint: Update to 0.19.1 2022-04-18 07:58:18 +08:00
py-pymatgen science/py-pymatgen: Update 2022.0.17 -> 2022.4.26 2022-05-09 20:50:24 -07:00
py-pymol textproc/libxml2: bump all LIB_DEPENDS consumers 2022-04-10 15:11:41 -04:00
py-PyNE */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
py-pyosf
py-pyprecice science/py-pyprecice: New port: Coupling library for partitioned multi-physics simulations 2022-06-20 09:53:12 -07:00
py-pysal science/py-pysal: Update to 2.6.0 2022-03-08 02:11:26 +08:00
py-pyscf science/py-pyscf: Unbreak fetch 2022-01-12 20:40:22 -08:00
py-pyteomics science/py-pyteomics: Update to 4.5.3 2022-03-25 21:37:13 +08:00
py-qcelemental science/py-qcelemental: Update 0.24.0 -> 0.25.0 2022-06-15 13:56:03 -07:00
py-qcengine devel/py-pint: Update to 0.19.1 2022-04-18 07:58:18 +08:00
py-qspin science/py-qspin: Fix build with setuptools 58.0.0+ 2022-03-25 21:38:19 +08:00
py-quantities science/py-quantities: Update 0.12.5 -> 0.13.0 2022-01-14 08:48:13 -08:00
py-rmf science/{,py-}rmf: Update 1.3.1 -> 1.4 2022-03-11 08:59:47 -08:00
py-rmsd
py-ruffus
py-scikit-fuzzy
py-scikit-learn cience/py-scikit-learn: Update to 1.1.1 2022-06-13 10:44:37 +08:00
py-scikit-optimize science/py-scikit-optimize: Update to 0.9.0 2021-10-25 23:57:36 +08:00
py-scikit-sparse science/py-scikit-sparse: Update 0.4.5 -> 0.4.6 2021-09-13 15:28:57 -07:00
py-scimath
py-scipy science/py-scipy: Update to 1.8.1 2022-05-25 15:46:45 +08:00
py-scoria
py-segregation science/py-segregation: Update to 2.3.1 2022-07-11 21:50:36 +08:00
py-segyio science/py-segyio: switch to USES=pytest and fix tests 2022-04-26 16:46:03 +03:00
py-SimpleSpectral
py-sklearn-pandas science/py-sklearn-pandas: Add py-sklearn-pandas 2.2.0 2022-01-29 07:26:35 +08:00
py-skrebate science/py-skrebate: Update USES=python 2021-11-06 03:14:24 +08:00
py-spaghetti science/py-spaghetti: Update to 1.6.5 2022-01-24 02:50:48 +08:00
py-spglib science/{,py-}spglib: Update 1.16.3 -> 1.16.5 2022-05-07 22:27:10 -07:00
py-tensorflow devel/icu: update to 71.1 2022-04-07 00:39:10 +00:00
py-thewalrus science/py-thewalrus: New port: Open source library for hafnian calculation 2022-05-31 20:42:38 -07:00
py-tobler science/py-tobler: Update USES=python 2022-07-11 21:50:37 +08:00
py-trainstation science/py-trainstation: New port: Convenient training of linear models 2022-03-07 12:14:14 -08:00
py-veusz devel/py-qt5, devel/py-sip: Update versions 2022-03-07 18:39:13 +01:00
pybrain
pynn science/pynn: Update to 0.10.0 2021-12-17 16:18:50 +08:00
q science/q: New port: Molecular Dynamics (MD) tools 2022-05-23 18:54:08 -07:00
qbox science/qbox: Update 1.74.2 -> 1.74.3 2022-07-05 20:20:52 -07:00
qcl
qiskit-aer
qmcpack */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
quantum-espresso
quantum-espresso-pseudopotentials
quantum-jet science/quantum-jet: New port: Cross-platform header-only library for simulating quantum circuits 2022-05-31 13:02:18 -07:00
qwalk textproc/libxml2: bump all LIB_DEPENDS consumers 2022-04-10 15:11:41 -04:00
R-cran-AMORE science/R-cran-AMORE: Mark it DEPRECATED 2022-07-12 04:41:02 +00:00
R-cran-bayesm
R-cran-cmprsk science/R-cran-cmprsk: Update to 2.2-11 2022-01-09 06:54:19 +00:00
R-cran-DCluster science/R-cran-DCluster: Update to 0.2-8 2022-06-09 12:51:21 +00:00
R-cran-e1071 science/R-cran-e1071: Update to 1.7-11 2022-06-09 23:10:44 +00:00
R-cran-eco
R-cran-Epi science/R-cran-Epi: Update to 2.47 2022-07-12 02:10:02 +00:00
R-cran-epicalc
R-cran-etm
R-cran-FAdist science/R-cran-FAdist: upgrade to 2.4 2022-03-06 21:56:52 +01:00
R-cran-fastICA science/R-cran-fastICA: Update to 1.2-3 2021-09-25 18:13:13 -04:00
R-cran-kernlab science/R-cran-kernlab: Update to 0.9-31 2022-06-10 02:05:52 +00:00
R-cran-ks science/R-cran-ks: adding a R library for Kernel Smoothing 2022-05-06 17:32:19 +02:00
R-cran-snow science/R-cran-snow: Update to 0.4-4 2021-10-28 10:20:03 +00:00
R-cran-som
R-cran-udunits2 science/R-cran-udunits2: Update to 0.13.2.1 2022-03-15 23:22:57 +00:00
rdkit science/rdkit: Update 2022.03.3 -> 2022.03.4 2022-07-05 20:20:52 -07:00
rmf */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
rubygem-ai4r
rubygem-cdo
rubygem-rgeo science/rubygem-rgeo: Update to 2.4.0 2022-01-26 03:51:05 +08:00
rubygem-rgeo-geojson
rubygem-rgeo-proj4 science/rubygem-rgeo-proj4: Update to 3.1.1 2021-11-22 02:24:31 +08:00
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf science/rubygem-ruby-netcdf: Update to 0.8.0 2022-03-31 06:21:46 +08:00
scidavis science/scidavis: tell portscout to ignore old tag 2022-05-10 21:31:45 +03:00
segyio devel/cmake: Update to 3.23.0 2022-05-16 08:49:43 +02:00
shelxle science/shelxle: Update 1.0.1401 -> 1.0.1406 2022-07-05 20:20:52 -07:00
siconos cleanup: drop support for EOL FreeBSD 11.X 2021-09-30 23:23:30 +02:00
siesta science/siesta: unbreak on powerpc* / main 2022-07-04 02:00:31 +02:00
sigrok-cli science/sigrok-cli: Update version 0.7.1=>0.7.2 2022-06-06 16:56:48 -05:00
sigrok-firmware all: Take maintainership 2022-06-06 06:48:06 -05:00
sigrok-firmware-fx2lafw all: Take maintainership 2022-06-06 06:48:06 -05:00
sigrok-firmware-utils all: Take maintainership 2022-06-06 06:48:06 -05:00
silo science/silo: Fix build with HDF5 1.10.8+ 2022-06-16 23:13:02 +08:00
simbody
simgrid devel/boost-all: bump all library consumers after boost upgrade 2022-05-22 23:17:16 +03:00
simint
simlib
simple-dftd3 science/simple-dftd3: Update 0.5.1 -> 0.6.0 2022-04-30 12:48:30 -07:00
simsmith
smoldyn science/smoldyn: Update 2.66 -> 2.67 2021-11-06 16:56:37 -07:00
sparta science/sparta: Update 20Oct2021 -> 7Jan2022 2022-01-08 01:09:25 -08:00
spglib science/spglib: fix build without libomp 2022-05-31 03:05:56 +00:00
step KDE: Update KDE Gear to 22.04.3 2022-07-07 23:49:42 +02:00
svmlight science/svmlight: fix build on 13.0+ 2021-10-29 18:01:10 +00:00
tblite science/tblite: Update 0.2.0 -> 0.2.1 2022-05-21 20:48:48 -07:00
teem
tfel devel/boost-all: bump all library consumers after boost upgrade 2022-05-22 23:17:16 +03:00
tfel-edf devel/boost-all: bump all library consumers after boost upgrade 2022-05-22 23:17:16 +03:00
thermofun science/thermofun: Update 0.3.8 -> 0.3.9 2022-01-18 10:42:45 -08:00
tinker science/tinker: don't set -march=native 2022-05-22 00:10:44 +00:00
trilinos science/trilinos: Broken on i386 2022-07-10 16:51:17 -07:00
udunits
ukrmol+ science/ukrmol+: Broken on aarch64 2022-06-03 11:23:35 -07:00
v_sim science/netcdf: Update to 4.8.1 2022-03-08 02:10:58 +08:00
vipster
vmd science/netcdf: Update to 4.8.1 2022-03-08 02:10:58 +08:00
voro++
votca */*: Replace science/szip with science/libaec 2022-06-16 23:13:01 +08:00
wannier90
wwplot
wxmacmolplt
xcfun
xcrysden framework: Add new USES 'magick' for graphics/ImageMagick* 2021-12-11 14:50:53 +01:00
xdrawchem
xtb science/xtb: update to 6.4.1 2021-11-27 11:49:53 -06:00
yoda science/yoda: Fix build with setuptools 58.0.0+ 2022-07-13 08:19:32 +08:00
zotero devel/libffi: Bump deps PORTREVISION for shlib change 2022-05-09 12:23:51 -07:00
Makefile devel/ChipmunkPhysics: Move to science/ChipmunkPhysics 2022-07-13 00:19:38 -07:00