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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-23 00:43:28 +00:00
freebsd-ports/biology
Edwin Groothuis 37f2224fa6 PERL -> REINPLACE
And some ports have USE_PERL5=yes now.
2002-11-04 05:46:38 +00:00
..
artemis Initial import of artemis 4.0 2001-12-22 14:39:40 +00:00
avida Make biology/avida building on -current again 2002-11-03 23:40:02 +00:00
babel * Replace pkg-message about setting BABEL_DIR with a wrapper script 2001-12-02 13:09:47 +00:00
biojava Unbreak this port: 2002-06-16 01:08:49 +00:00
chemeq upgrade to V110-1 2002-04-21 13:33:29 +00:00
clustalw - Add a new patch 2002-03-27 14:01:57 +00:00
coalesce
crimap Add crimap 2.4, a tool for the creation of multilocus linkage maps. 2002-03-27 14:42:56 +00:00
deft PERL -> REINPLACE 2002-11-04 05:46:38 +00:00
distribfold Update CATEGORIES as per ports/44331. 2002-10-21 10:59:11 +00:00
dna-qc PERL -> REINPLACE 2002-11-04 05:46:38 +00:00
emboss - Unbreak fetching of distfiles. (Needs update as soon as freeze is over.) 2002-09-27 08:58:19 +00:00
fasta
fasta3 Prefer <limits.h> over <values.h> as the latter has been removed from 2002-08-23 03:36:33 +00:00
fastdnaml
flip PERL -> REINPLACE 2002-11-04 05:46:38 +00:00
fluctuate
gaussian98 Remove USE_NEWGCC, which is no longer supported or required. 2002-08-31 02:38:29 +00:00
genpak Bump png major 2001-09-11 03:32:41 +00:00
gff2ps PERL -> REINPLACE 2002-11-04 01:56:21 +00:00
gperiodic Deploy USE_GNOMENG infrastructure 2002-08-30 12:59:40 +00:00
grappa
hmmer - Add patch that will, for -CURRENT only, change: -pthread -> -lc_r 2002-07-11 10:52:14 +00:00
kinemage
L-Breeder Fix dependency on wxgtk 2002-10-19 09:50:53 +00:00
lamarc
libgenome - Support CXXFLAGS properly. 2002-08-17 19:16:55 +00:00
migrate
molden Note distribution term. 2002-05-27 06:25:53 +00:00
mopac
nab PERL -> REINPLACE 2002-11-04 01:56:21 +00:00
ncbi-toolkit add forgotten "USE_REINPLACE=yes" 2002-09-21 14:56:18 +00:00
nclever Add nclever 4.0, a character-based version of NCBI's Entrez program. 2001-09-26 09:22:02 +00:00
ortep3
p5-AcePerl CC, CXX, CFLAGS, PTHREAD_CFLAGS and PTHREAD_LIBS may contain `/' in 2002-10-10 12:59:36 +00:00
p5-bioperl - Update to version 0.7.2, somewhat overdue. :-) 2002-01-25 11:46:09 +00:00
p5-bioperl-devel - Add NO_LATEST_LINK, which should've been there in the first place. :-( 2001-09-20 15:11:14 +00:00
paml
phylip Update to version 3.6.a3. 2002-08-13 16:07:45 +00:00
pkg
platon
povchem PERL -> REINPLACE 2002-11-04 02:35:01 +00:00
primer3 add primer3 0.9 2002-09-17 15:31:09 +00:00
psi88 update WWW and master site 2001-10-22 06:36:14 +00:00
py-biopython Use $PYNUMERIC in the dependencies. 2002-07-15 11:37:35 +00:00
pymol o Fix examples directory path which is changed in last revision. 2002-08-26 05:13:28 +00:00
rasmol Fix WWW. 2002-03-08 20:50:08 +00:00
recombine
ruby-bio Use RUBY_MOD*. 2002-10-06 21:08:30 +00:00
seaview Bump XForms lib. version. 2002-07-04 09:20:30 +00:00
seqio Remove a redundant trailing space. 2001-10-21 07:55:45 +00:00
sim4 Update to sim4-2002.03.03 to unbreak build. 2002-05-04 21:45:10 +00:00
spdbv Swiss-PdbViewer is an application that provides a user friendly interface 2002-04-02 16:18:53 +00:00
t_coffee Add t_coffee 1.37, a multiple DNA or protein sequence alignment package. 2002-01-25 14:58:16 +00:00
tinker Upgrade tinker to the latest revision 2002-01-19 15:15:16 +00:00
treeviewx Chase new name of wxgtk shared library. 2002-09-09 14:21:08 +00:00
tRNAscan-SE Port needs perl to build. 2002-11-04 01:47:57 +00:00
wise PERL -> REINPLACE 2002-11-04 05:46:38 +00:00
xdrawchem Use ${ECHO_CMD} instead of ${ECHO} where you mean the echo command; 2002-01-29 09:39:59 +00:00
xmolwt Deploy USE_GNOMENG infrastructure 2002-08-30 12:59:40 +00:00
Makefile Connect distribfold to build after moving it from misc category 2002-10-07 03:07:59 +00:00