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40 lines
880 B
Makefile
40 lines
880 B
Makefile
# $FreeBSD$
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PORTNAME= bedtools
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DISTVERSIONPREFIX= v
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DISTVERSION= 2.29.2
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CATEGORIES= biology
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Toolset for genome set arithmetic such as intersect, union
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LICENSE= GPLv2
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LICENSE_FILE= ${WRKSRC}/LICENSE
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TEST_DEPENDS= bash:shells/bash
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USES= compiler:c++11-lang gmake python
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USE_GITHUB= yes
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GH_ACCOUNT= arq5x
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GH_PROJECT= bedtools2
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post-extract:
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# Avoid conflict with C++20 <version> by adding .txt suffix
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@${MV} ${WRKSRC}/src/utils/gzstream/version \
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${WRKSRC}/src/utils/gzstream/version.txt
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pre-configure:
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@${REINPLACE_CMD} -e 's|python|${PYTHON_CMD}|g' ${WRKSRC}/Makefile
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@${REINPLACE_CMD} -e 's|@\$$(CXX)|$$(CXX)|g' \
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${WRKSRC}/*/Makefile \
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${WRKSRC}/*/*/Makefile \
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${WRKSRC}/*/*/*/Makefile
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post-install:
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${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/bedtools
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do-test:
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(cd ${WRKSRC}/test && bash test.sh)
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.include <bsd.port.mk>
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