1
0
mirror of https://git.FreeBSD.org/ports.git synced 2024-11-24 00:45:52 +00:00
freebsd-ports/biology
TAKATSU Tomonari 0cbe65e47c - Repocopy print/py-reportlab to print/py-reportlab1
to preserve version 1.x and to update to 3.0

  print/py-reportlab:
    - Update print/py-reportlab to 3.0 based on print/py-reportlab2
    - Support STAGEDIR
    - Use PYDISTUTILS_AUTOPLIST
      * Remove pkg-plist, accordingly
    - Set CONFLICTS
    - Add PORTSCOUT
    - Replace tab with a single space after WWW: in pkg-descr

  print/py-reportlab1:
    - Support STAGEDIR
    - Add PKGNAMESUFFIX not to duplicate ports with the same name
    - Set CONFLICTS
    - Use PYDISTUTILS_AUTOPLIST
      * Remove pkg-plist, accordingly
    - Make use of PORTDOCS
    - Set OPTIONS_DEFINE explicitly
    - Fix include statement
    - Make docs unconditional to stage
    - Replace tab with a single space after WWW: in pkg-descr

  print/py-reportlab2:
    - Update CONFLICTS
    - Set PORTSCOUT

  dependent ports:
    - Switch dependency from print/py-reportlab to print/py-reportlab1
      * biology/py-biopython
      * deskutils/gourmet
      * deskutils/griffith
      * games/pythonsudoku
      * misc/pdfmap
      * print/py-trml2pdf
      * www/py-satchmo

PR:		ports/186970
Submitted by:	tota (myself)
Approved by:	Muhammad Moinur Rahman (maintainer)
2014-02-25 12:44:10 +00:00
..
ariadne
artemis Support stage 2014-01-20 23:06:48 +00:00
avida
babel
biococoa
biojava Remove trailing whitespaces from category biology 2014-02-21 13:35:26 +00:00
blast
blat
boinc-simap Drop maintainership BOINC ports, old machine running them gave up. 2014-02-04 17:54:29 +00:00
chemeq
clustalw
consed Remove trailing whitespaces from category biology 2014-02-21 13:35:26 +00:00
crux Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
embassy
emboss
fasta
fasta3
fastdnaml Support staging 2014-02-16 11:32:43 +00:00
finchtv Remove trailing whitespaces from category biology 2014-02-21 13:35:26 +00:00
fluctuate Support staging 2014-02-16 11:35:00 +00:00
garlic
genpak Remove trailing whitespaces from category biology 2014-02-21 13:35:26 +00:00
gff2ps
gmap
gperiodic
grappa
hmmer
iolib
jalview Fix properties on pkg-plist 2014-01-21 23:18:05 +00:00
lagan
lamarc
libgenome biology/libgenome: Fix build on dragonfly 2014-02-05 23:47:48 +00:00
libsbml
linux-foldingathome
mafft
mapm3
migrate - Stagify; cleanup Makefile and reorder the knobs a bit 2014-01-29 12:08:29 +00:00
molden
mopac
mrbayes
mummer Remove trailing whitespaces from category biology 2014-02-21 13:35:26 +00:00
muscle
ncbi-toolkit
njplot Remove trailing whitespaces from category biology 2014-02-21 13:35:26 +00:00
ortep3
p5-AcePerl - Stage support 2014-02-10 06:56:52 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite - fix pkg-plist 2014-01-30 07:34:25 +00:00
p5-Bio-GFF3 - Update to 1.9 2014-01-23 03:28:37 +00:00
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS - Stage support 2014-01-31 12:47:06 +00:00
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl Remove trailing whitespaces from category biology 2014-02-21 13:35:26 +00:00
p5-bioperl-run Remove trailing whitespaces from category biology 2014-02-21 13:35:26 +00:00
paml Remove trailing whitespaces from category biology 2014-02-21 13:35:26 +00:00
phd2fasta
phrap
phred
phylip
phyml - Stage support 2014-01-31 12:32:55 +00:00
platon
plink Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
plinkseq - Stage support 2014-01-31 12:33:11 +00:00
povchem
primer3
protomol
psi88
py-biopython - Repocopy print/py-reportlab to print/py-reportlab1 2014-02-25 12:44:10 +00:00
pycogent
pyfasta - Convert to PYDISTUTILS_AUTOPLIST 2014-01-31 12:31:24 +00:00
pymol
python-nexus - Convert to PYDISTUTILS_AUTOPLIST 2014-01-31 12:30:39 +00:00
rasmol
recombine - Support staging 2014-02-16 11:39:42 +00:00
ruby-bio
seaview
seqan
seqio Support staging 2014-02-16 11:42:09 +00:00
seqtools Fix old makeplist bug. 2014-02-12 14:03:25 +00:00
sim4 Support staging 2014-02-16 11:43:07 +00:00
ssaha Deprecate ports unmaintained for which distillator is not able to find public distfiles 2014-02-07 18:50:30 +00:00
t_coffee
tinker
treepuzzle
treeviewx
tRNAscan-SE biology/tRNAscan-SE: Fix hardcoded perl path 2014-02-05 23:44:50 +00:00
ugene Unbreak the fetch: one of the documentation PDF files was rerolled. 2014-01-30 13:38:26 +00:00
velvet Remove trailing whitespaces from category biology 2014-02-21 13:35:26 +00:00
wise biology/wise: Add dragonfly support 2014-02-05 23:42:06 +00:00
xmolwt
Makefile