Thierry Thomas 06c732372e Remove the test about openmp.		2020-03-17 11:01:56 +00:00
..
2d-rewriter
abinit	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
afni
agrum	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
aircraft-datcom	audio/festvox-cmu_us_slt_arctic, games/flightgear-terragear, graphics/zathura-cb, graphics/zathura-pdf-poppler, graphics/zathura-ps, math/nfft, net/py-mpi4py, science/aircraft-datcom, x11-themes/gnome-icons-luv: reset MAINTAINER	2020-03-02 17:35:42 +00:00
ALPSCore	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
antioch
apbs
atom	Mark a few ports broken (unfetchable)	2020-01-05 10:26:04 +00:00
atompaw	atompaw is actually fetchable	2020-01-05 11:52:46 +00:00
avogadro2	science/avogadro2: Update 1.91.0 -> 1.93.0	2020-02-06 07:09:42 +00:00
avogadrolibs	science/avogadrolibs: Update 1.92.1 -> 1.93.0	2020-02-06 05:09:44 +00:00
bagel	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
bddsolve	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
berkeleygw	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
bodr
brian	Deprecate some ports using deprecated version of python	2020-03-08 17:01:46 +00:00
buddy
cdcl
cdf
cdk	New port: science/cdk: Chemistry Development Kit	2020-01-09 16:48:21 +00:00
cdo	Update jasper to 2.0.16	2019-12-27 13:43:00 +00:00
cgnslib	Upgrade to v4.1.1.	2020-03-17 11:01:17 +00:00
cgribex	Update jasper to 2.0.16	2019-12-27 13:43:00 +00:00
checkmol	- Remove compat < 11 dependencies from bootstrap and compiler. It could fix problems	2020-03-06 06:26:05 +00:00
chemical-mime-data
chemps2	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
chemtool
chemtool-devel
chrono	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
clhep
clipper
code_saturne	Remove the test about openmp.	2020-03-17 11:01:56 +00:00
colt
coordgenlibs	science/coordgenlibs: Update 1.3.2 -> 1.4.0	2020-03-17 07:32:33 +00:00
cp2k
cp2k-data
crf++
dalton	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
datawarrior
dcl
devisor
dftbplus	Deprecate a few ports	2020-02-23 15:25:53 +00:00
dkh
dlib-cpp	science/dlib-cpp and science/py-dlib: Update to 19.19.	2020-02-12 17:28:11 +00:00
dlpoly-classic
drawxtl
dvc	Deprecate a few ports	2020-02-23 15:25:53 +00:00
eccodes	Update to 2.16.0	2020-01-25 18:24:28 +00:00
elk
elmerfem	science/elmerfem: Add the GUI option	2020-03-10 16:52:41 +00:00
epte
erd
erkale	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
erkale-pseudopotentials
esys-particle	Mark science/esys-particle as BROKEN (not just on 13)	2019-12-30 14:15:34 +00:00
fastcap
fasthenry
fisicalab	Return theraven's ports to the pool after safekeeping his commit bit.	2020-03-05 20:49:05 +00:00
fleur	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
fsom
fvcom
fvcom-mpi
gabedit	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
gamess-us	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
gchemutils	Remove textproc/gnome-doc-utils.	2020-01-27 19:40:17 +00:00
gdma
getdp	- Update to 3.3.0.	2019-12-22 02:28:57 +00:00
ghemical
ghmm
gnudatalanguage
gpaw-setups
gramps	science/gramps: Update to 5.1.1	2019-12-10 13:54:03 +00:00
grib_api
gromacs	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
hdf
hdf5	Update to 1.10.6	2019-12-30 16:57:12 +00:00
hdf5-18
healpix
highfive	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
hypre	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
iboview	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
InsightToolkit	- Update devel/gdcm to 3.0.5.	2020-02-22 23:28:41 +00:00
isaac-cfd
jdftx
jmol	science/jmol: Update 14.30.1 -> 14.30.2 and unbreak	2020-02-01 03:32:16 +00:00
jstrack
kalzium	KDE Applications: update to 19.12.3	2020-03-06 22:11:55 +00:00
kim-api
kst2
lammps	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
lamprop
latte	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
libaec
libccp4
libcint	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
libctl
libefp
libgeodecomp	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
libghemical
libgridxc
libint
libint2	science/libint2: Update 2.5.0-beta.2-20 -> 2.6.0	2020-01-13 02:54:47 +00:00
libkml	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
liblinear
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts
lm	Bump PORTREVISION for devel/protobuf shlib change	2020-01-22 05:53:20 +00:00
luscus
madness	Update devel/tbb to 2020.0 and bump dependent ports' revisions [1]	2019-12-26 16:25:22 +00:00
maeparser	science/maeparser: Update 1.2.2 -> 1.2.3	2020-03-17 07:19:57 +00:00
massxpert
mbdyn	science/mbdyn: use math/metis instead of expired math/metis4 for METIS option	2020-02-22 18:53:40 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
metaphysicl
minc2
mmdb2	science/mmdb2: Update 2.0.19 -> 2.0.20	2020-01-13 03:30:45 +00:00
mmtf-cpp
mol2ps	- Remove compat < 11 dependencies from bootstrap and compiler. It could fix problems	2020-03-06 06:26:05 +00:00
molgif
molscript
molsketch
mpb
mpqc	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
msms
multiwfn	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
namd
ncnn	science/ncnn: Update 20200106 -> 20200226	2020-02-29 05:22:00 +00:00
nest	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
netcdf	Update to 4.7.3	2019-12-08 16:52:27 +00:00
netcdf-cxx
netcdf-fortran
nifticlib
nwchem
nwchem-data
octopus
openbabel
openkim
openkim-models
openmx	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
opensim-core	science/opensim-core: Update 4.0-601 -> 4.1	2020-02-04 07:01:58 +00:00
opensph
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2	Update devel/tbb to 2020.0 and bump dependent ports' revisions [1]	2019-12-26 16:25:22 +00:00
paje
paraview	Deprecate some ports using deprecated version of python	2020-03-08 17:01:46 +00:00
pcmsolver
PETSc	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
pnetcdf
pulseview	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
py-abipy	Mark BROKEN: missing build depends	2020-01-18 22:22:27 +00:00
py-asdf	Update to 2.5.2	2020-03-01 06:48:55 +00:00
py-ase	science/py-ase: Update 3.18.1 -> 3.19.0	2019-12-27 06:46:45 +00:00
py-avogadrolibs	science/py-avogadrolib: Update 1.91.0-107 -> 1.93.0	2020-02-06 07:17:20 +00:00
py-cdo
py-chainer	science/py-chainer: Update 7.1.0 -> 7.2.0	2020-02-15 03:59:09 +00:00
py-chainer-chemistry	science/py-chainer-chemistry: Update 0.6.0 -> 0.7.0	2019-12-22 03:10:17 +00:00
py-chempy	science/py-chempy: Update 0.7.9 -> 0.7.10	2020-03-07 20:47:22 +00:00
py-coards
py-DendroPy
py-dlib	science/dlib-cpp and science/py-dlib: Update to 19.19.	2020-02-12 17:28:11 +00:00
py-eccodes-python	Update to 0.9.5	2020-01-17 16:40:13 +00:00
py-geolinks	Add py-geolinks 0.2.0	2020-01-18 18:23:32 +00:00
py-geomet	Add py-geomet 0.2.1	2019-12-29 12:46:17 +00:00
py-geometer	Update to 0.2.2	2020-02-17 19:43:41 +00:00
py-gpaw	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
py-GPy	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
py-GPyOpt	Deprecate a few ports	2020-02-23 15:25:53 +00:00
py-gsd	science/py-gsd: Update 1.9.3 -> 1.10.0	2020-01-03 03:58:46 +00:00
py-h5json	New port: science/py-h5json: Tools and library for representing HDF5 in JSON	2020-01-26 10:07:36 +00:00
py-h5py
py-kinematics
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mlpy	Deprecate a few ports	2020-02-23 15:25:53 +00:00
py-mmtf-python
py-molmod
py-netCDF4
py-obspy	- Update to 1.2.1	2020-03-12 03:58:15 +00:00
py-oddt	science/py-oddt: Update 0.6 -> 0.7	2019-12-27 05:12:21 +00:00
py-OpenFermion
py-openpiv
py-paida
py-paramz
py-phono3py	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
py-phonopy
py-pupynere
py-pyaixi
py-pycsw	Add py-pycsw 2.4.2	2020-01-18 18:23:39 +00:00
py-pydicom
py-PyFR	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
py-pygeodesy
py-pygeometa	Add py-pygeometa 0.5.0	2020-01-18 18:23:44 +00:00
py-pymatgen	science/py-pymatgen: fix build on GCC architectures	2020-01-23 10:44:41 +00:00
py-pymol	Deprecate a few ports	2020-02-23 15:25:53 +00:00
py-pyosf
py-PyQuante	Deprecate a few ports	2020-02-23 15:25:53 +00:00
py-pysal
py-pyteomics	Update to 4.2	2020-03-01 06:49:00 +00:00
py-qcelemental	science/py-qcelemental: Update 0.11.0 -> 0.12.0	2020-01-12 21:07:37 +00:00
py-qcengine
py-qspin
py-quantities	science/py-quantities: Update 0.12.3 -> 0.12.4	2020-01-12 07:24:33 +00:00
py-rmf
py-rmsd
py-ruffus
py-scikit-fuzzy	Deprecate a few ports	2020-02-23 15:25:53 +00:00
py-scikit-learn	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
py-scikit-sparse
py-scimath
py-scipy	Revert r524969 and unbreak bulk -a	2020-02-02 16:40:43 +00:00
py-scoria	science/py-scoria: Update 1.0.3 -> 1.0.4	2020-02-29 05:15:13 +00:00
py-SimpleSpectral
py-spglib
py-tensorflow	devel/icu: update to 66.1	2020-03-13 09:47:16 +00:00
py-tensorflow-estimator
py-veusz	science/py-veusz: Update 3.1 -> 3.2	2020-03-11 06:11:21 +00:00
py-ws2300	Deprecate a few ports	2020-02-23 15:25:53 +00:00
pybrain
pynn	- Update to 0.9.5	2020-02-22 15:05:40 +00:00
qbox	science/qbox: Update 1.68.1 -> 1.68.2	2020-02-05 03:00:02 +00:00
qcl
qiskit-aer	science/qiskit-aer: Broken on i386 due to undefined reference to `__atomic_load'	2020-03-15 17:43:20 +00:00
qmcpack	Drop dependency on devel/openmp	2020-03-08 21:56:36 +00:00
quantum-espresso	science/quantum-espresso: Update 6.4.1 -> 6.5	2019-12-31 19:32:59 +00:00
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-etm	- Update to 1.0.5.1	2020-01-30 16:35:33 +00:00
R-cran-FAdist	Adding R-cran-FAdist, a R package with a collection of probability distributions	2020-01-28 18:13:38 +00:00
R-cran-fastICA	Return dbn's ports to the pool after safekeeping his commit bit.	2020-02-03 20:21:08 +00:00
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit	graphics/py-pillow: Update to 7.0.0	2020-02-24 11:36:15 +00:00
rmf	Fix build with hdf5 1.10.6	2020-01-01 16:31:57 +00:00
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody	Fix math/openblas and bump dependent ports	2020-01-30 14:17:44 +00:00
simgrid	devel/boost-*: update to 1.72.0	2019-12-11 17:53:48 +00:00
simint
simlib
simsmith
smoldyn
sparta	science/sparta: Update 8Jan2020 -> 24Jan2020	2020-01-24 17:06:22 +00:00
spglib
step	KDE Applications: update to 19.12.3	2020-03-06 22:11:55 +00:00
svmlight
szip
teem
tfel	science/tfel: update to version 3.3	2019-12-21 19:53:14 +00:00
tinker
udunits
v_sim
vipster	science/vipster: Limit the version format to prevent portscout reporting odd revisions	2020-01-12 20:12:43 +00:00
vmd	Return dbn's ports to the pool after safekeeping his commit bit.	2020-02-03 20:21:08 +00:00
voro++
wannier90	science/wannier90: Update 3.0.0 -> 3.1.0	2020-03-08 02:34:49 +00:00
wwplot	science/wwplot: Update 0.0.7 -> 0.0.8	2020-01-25 17:53:30 +00:00
wxmacmolplt
xcrysden
xdrawchem
xfce4-equake-plugin
yoda	science/yoda: Update 1.7.7 -> 1.8.0	2020-01-19 09:06:26 +00:00
Makefile	New port: science/qiskit-aer: Simulator for quantum circuits, including noise models	2020-03-12 01:05:55 +00:00