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3949bac7dc
freebsd-ports/science
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Thierry Thomas 3949bac7dc Upgrading to v. 4.1. 
Note: it's still broken on ia64, but this unbreaks on other platforms.

PR:		ports/179370
Submitted by:	Anton Shterenlikht <mexas (at) bris.ac.uk>
Approved by:	maintainer time-out
2014-03-31 21:37:11 +00:00
..
2d-rewriter Remove trailing whitespaces from category science 2014-02-21 13:39:18 +00:00
2dhf Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
abinit Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
afni Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
avogadro Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
bddsolve - Support staging 2014-03-20 09:34:19 +00:00
bft Convert s* to USES=zip 2014-03-10 17:01:36 +00:00
bodr
brian Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
buddy - Stage support 2014-02-21 01:58:34 +00:00
cdcl
cdf Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
cdo
cgnslib Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
checkmol - Bump PORTREVISION. Freepascal compiler was updated to 2.6.4 2014-03-26 04:04:45 +00:00
chemical-mime-data
chemtool
chemtool-devel
clhep
colt
crf++
dcl Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
devisor
dlpoly-classic Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
dtiquery
ecs - Unbreak Code_Saturne; 2014-03-26 23:29:28 +00:00
elmer-eio Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
elmer-hutiter Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
elmer-matc Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
elmer-meshgen2d
elmergrid
elmerpost Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
epte - Stage support 2014-02-06 10:41:38 +00:00
euler Deprecate a few old unmaintained ports 2014-03-11 21:21:14 +00:00
fastcap - Stage support 2014-02-21 05:29:59 +00:00
fasthenry
felt Deprecate a few unmaintained ports (leaf ports, non staged and unmaintained since more than 12 years) 2014-03-08 22:26:21 +00:00
fisicalab
flounder Deprecate a few old unmaintained ports 2014-03-11 21:21:14 +00:00
fvcom Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
fvcom-mpi
fvm - Unbreak Code_Saturne; 2014-03-26 23:29:28 +00:00
g3data Consolidate the docbook ports into -sgml and -xml variants. 2014-02-19 14:45:19 +00:00
gamess Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
gchemutils Fix compile on 10+ 2014-03-10 22:29:20 +00:00
gdis Deprecate a few old unmaintained ports 2014-03-11 21:21:14 +00:00
getdp Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
ghemical Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
ghmm
gnudatalanguage Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
gramps
gromacs Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
gsmc
gtamsanalyzer
gwyddion - Update to 2.35 2014-03-11 02:42:58 +00:00
h5utils
harminv Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
hdf Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
hdf5 - Support staging 2014-03-31 19:05:36 +00:00
hdf5-18 - USE_BZIP2 -> USES=tar:bzip2 2014-03-28 12:52:00 +00:00
hdf-java - Undeprecate by updating MASTER_SITES 2014-03-30 21:37:40 +00:00
hs-bio - Reroll and update bootstrap Haskell compilers to GHC 7.6.3 on 8.x and 2014-03-29 00:52:54 +00:00
InsightToolkit
isaac-cfd Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
jmol
jstrack
kalzium Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
kst2 graphics/vips and the rest: 2014-03-28 09:23:08 +00:00
lamprop
libctl Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
libghemical Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
libint
libkml Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
liblinear Convert s* to USES=zip 2014-03-10 17:01:36 +00:00
liboglappth - Stage support 2014-02-03 14:31:32 +00:00
libquantum - Stage support 2014-02-03 13:57:46 +00:00
libsvm Convert s* to USES=zip 2014-03-10 17:01:36 +00:00
libsvm-python
linsmith
massxpert
mbdyn Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
mcstas Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
medit
meep Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
mei
minc
minc2 - Downgrade to the latest stable release; 2014-01-29 17:31:04 +00:00
mol2ps - Fix typo 2014-03-26 04:18:14 +00:00
mpb Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
mpqc support LDFLAGS (fixes libghemical) 2014-03-25 06:30:21 +00:00
mpqc-mpich
ncs - Unbreak Code_Saturne; 2014-03-26 23:29:28 +00:00
netcdf Add USES=gmake to fix installation on systems that use fmake by default. 2014-03-08 18:07:13 +00:00
netcdf3-ftn science/netcdf3-ftn: Mark unsafe for parallel builds 2014-03-28 09:19:50 +00:00
netcdf4 Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes". In most cases 2014-02-16 17:15:31 +00:00
netcdf-ftn
nifticlib Restore r323814 to remove MAKE_JOBS_UNSAFE. 2014-02-20 22:40:14 +00:00
openbabel
openkim Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
p5-Algorithm-SVMLight Support staging. 2014-02-06 14:07:44 +00:00
p5-Chemistry-3DBuilder - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Bond-Find - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Canonicalize - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-Mopac - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-File-PDB - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SLN - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SMARTS - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-SMILES - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-VRML - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-File-XYZ - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-FormulaPattern - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-InternalCoords - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Isotope - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern - add stage support 2014-01-29 17:18:46 +00:00
p5-Chemistry-Mok - Stage support 2014-02-01 14:41:07 +00:00
p5-Chemistry-Mol
p5-Chemistry-Pattern - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Reaction - add stage support 2014-01-29 17:00:41 +00:00
p5-Chemistry-Ring - add stage support 2014-01-29 17:00:41 +00:00
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB - add stage support 2014-01-29 17:00:41 +00:00
p5-Geo-WebService-Elevation-USGS
p5-PerlMol - add stage support 2014-01-29 17:00:41 +00:00
p5-Physics-Unit Support staging. 2014-02-06 14:10:06 +00:00
paje
paraview Upgrading to v. 4.1. 2014-03-31 21:37:11 +00:00
pnetcdf - Use USES=tar:bzip2 2014-03-29 19:52:23 +00:00
psi3 Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
psychopy - Fix build 2014-03-26 01:12:42 +00:00
py-coards
py-DendroPy
py-h5py Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-hcluster Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-mdp Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-mlpy Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-netCDF4 - Use new LIB_DEPENDS 2014-03-24 02:45:01 +00:00
py-obspy Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-paida
py-pupynere Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-pyaixi
py-pydap Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-pydicom
py-scikit-learn Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-scimath Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-scipy Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-ws2300
pybrain Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
pycdf Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
pynn Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
pyteomics science/pyteomics: 2014-03-31 10:55:37 +00:00
pyteomics.biolccc
qcl
qtresistors
R-cran-AMORE Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-bayesm Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-DCluster Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-e1071 - Update 1.6-3 2014-03-21 06:12:29 +00:00
R-cran-eco Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-Epi Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-epicalc Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-snow Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-som Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
ruby-dcl - Change to rubygem dependencies 2014-03-28 21:28:38 +00:00
ruby-gphys Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
ruby-netcdf Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
rubygem-ai4r
rubygem-netcdf This is a Ruby interface to the NetCDF scientific IO library. 2014-03-26 01:15:21 +00:00
sigrok-cli Chase lang/python31 expiration 2014-03-01 13:35:36 +00:00
silo
simlib
step KDE/FreeBSD team presents KDE SC 4.12.3 and KDE Workspace 4.11.7! 2014-03-04 19:15:39 +00:00
svmlight
szip - Support staging 2014-03-28 12:25:16 +00:00
udunits
v_sim Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
veusz Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
vmd
voro++ - Update to 0.4.6 2014-02-21 10:29:52 +00:00
x11iraf
xfce4-equake-plugin - Update to 1.3.4 2014-01-31 12:27:20 +00:00
xmakemol
xmds
Makefile This is a Ruby interface to the NetCDF scientific IO library. 2014-03-26 01:15:21 +00:00