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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-18 00:10:04 +00:00
freebsd-ports/science
2024-11-04 12:36:50 -08:00
..
2d-rewriter
abinit science/abinit: update 10.0.7 → 10.0.9 2024-09-13 01:24:49 -07:00
afni science/afni: update to 24.3.03 2024-10-19 11:48:36 +02:00
agrum science/agrum: update 1.15.0 → 1.15.1 2024-09-16 20:55:23 -07:00
aircraft-datcom
ALPSCore */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
antioch
apbs
arbor science/arbor: Broken on 15 with clang-15; Update WWW 2024-11-03 19:50:58 -08:00
ascent science/ascent: update 0.9.2 → 0.9.3 2024-09-09 12:09:43 -07:00
atompaw
avogadro2
avogadrolibs
axom
bagel */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
bddsolve */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
berkeleygw
bodr
bout++ science/bout++: update 4.4.2 → 5.1.1 2024-09-19 14:05:26 -07:00
bout++-merging-filaments science/bout++-merging-filaments: Broken 2024-10-06 11:31:38 -07:00
buddy
cantera science/cantera: update 3.0.0 → 3.0.1 2024-09-16 22:25:01 -07:00
cardioid science/cardioid: Fix build on 15 with clang-19 2024-11-03 12:09:30 -08:00
cdf
cdk
cdo science/cdo: Cosmetic change 2024-10-21 17:17:27 +08:00
cgnslib all: drop support for expired FreeBSD 14.0 2024-10-01 20:56:20 +02:00
cgribex science/cgribex: Remove GRIB_API option after grib_api deprecation 2024-10-21 17:17:27 +08:00
checkmol */*: Pass to fpc based ports control of ONLY_FOR_ARCHS 2024-09-18 01:22:50 -07:00
chemical-mime-data
chemicalfun
chemps2
chemtool
chemtool-devel
chimes-calculator
ChipmunkPhysics
chrono
cif-tools */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
clhep
clipper
code_saturne */*: Chase removal of sip from RUN_DEPENDS 2024-10-19 03:33:57 -04:00
colt
conduit
coordgenlibs
cp2k */*: Cosmetic changes 2024-09-10 21:09:33 -07:00
cp2k-data science/cp2k{,-data}: update 2024.2 → 2024.3 2024-09-10 19:45:59 -07:00
csvtk science/csvtk: Update to 0.31.0 2024-11-03 06:19:10 -06:00
dakota science/dakota: mark as BROKEN, fails to build with boost-1.85+ 2024-10-03 13:25:02 +03:00
dalton
dd_package
devisor
dftbplus
dftd3
dftd4
dimod
dirac
dkh
dlib-cpp science/dlib-cpp: Update to 19.24.6 2024-10-26 15:30:19 +03:00
drawxtl
dssp science/dssp: update 4.4.8 → 4.4.10 2024-10-24 20:27:38 -07:00
dvc
dwave-preprocessing
dynare
eccodes science/eccodes: Update to 2.38.3 2024-10-21 17:17:29 +08:00
elk science/elk: update 10.0.15 → 10.1.12 2024-10-07 02:42:12 -07:00
elmerfem
epte
erd
ergo
erkale
erkale-pseudopotentials
fastcap
fasthenry
fastjet science/fastjet: Fix build on 15; Update WWW 2024-11-03 12:09:28 -08:00
feff10
fleur
frontistr
fsom
fvcom
fvcom-mpi
gabedit
gamess-us
gbtolib
gchemutils
gcp science/gcp: update 2.3.1 → 2.3.2 2024-09-09 12:09:43 -07:00
gdma
geant4 textproc/xerces-c3: Update to 3.3.0 2024-10-25 23:56:41 +08:00
gemmi
getdp
ghemical
ghmm all: drop support for expired FreeBSD 14.0 2024-10-01 20:56:20 +02:00
gnudatalanguage
gpaw-setups
gramps
grib_api science/grib_api: Mark DEPRECATED and set EXPIRATION_DATE to 2024-11-30 2024-10-21 17:17:41 +08:00
gromacs science/gromacs: update 2024.3 → 2024.4 2024-11-02 22:25:54 -07:00
gsmc
gtamsanalyzer all: drop support for expired FreeBSD 14.0 2024-10-01 20:56:20 +02:00
h5utils
h5z-zfp
harminv science/harminv: update 1.3.1 → 1.4.2; add shared libraries 2024-10-11 09:45:56 -07:00
hdf science/hdf: update 4.2.15 → 4.3.0; add JAVA option 2024-09-24 00:52:09 -07:00
hdf5
hdf5-18
hdf5-110
healpix
helfem
hepmc3
highfive
hypre science/hypre: update 2.31.0 → 2.32.0 2024-10-09 02:41:59 -07:00
iboview
InsightToolkit
InsightToolkit501
isaac-cfd
jdftx
jmol
jstrack
kalzium
kim-api
kplib
kst2 science/kst2: update to 2.1 2024-10-31 13:26:54 +03:00
lammps
lamprop
latte
libaec science/libaec: Remove CMAKE_TESTING_ON 2024-10-07 22:16:42 +08:00
libccp4
libcifpp science/libcifpp: update 7.0.6 → 7.0.7 2024-10-24 20:27:38 -07:00
libcint
libctl
libecpint
libefp
libgetar
libghemical
libgridxc
libint
libint2 */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
libint2-psi4 */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
libkml */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
liblinear
libmbd
libmsym
libnegf
liboglappth
libpsml
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts
linearelasticity
linux-zotero
luscus
m-aneos
madness
maeparser */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
massxpert
mbdyn
mcpl
mcstas
mcstas-comps
mctc-lib
mcxtrace
mcxtrace-comps
mdynamix
medit
meep science/harminv: update 1.3.1 → 1.4.2; add shared libraries 2024-10-11 09:45:56 -07:00
metaphysicl
minc2
mmdb2
mmg
mmtf-cpp
mol2ps */*: Pass to fpc based ports control of ONLY_FOR_ARCHS 2024-09-18 01:22:50 -07:00
molgif
molscript all: drop support for expired FreeBSD 14.0 2024-10-01 20:56:20 +02:00
molsketch
mopac
mp2d
mpb
mpqc
mrchem
mrcpp
msms
mstore
multicharge
multiwfn
mutationpp
namd
ncrystal science/{,py-}ncrystal: update 3.9.6 → 3.9.7 2024-09-25 01:33:35 -07:00
nest */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
netcdf
netcdf-cxx
netcdf-fortran
nifticlib
nlcglib
nwchem
nwchem-data
ocean
octopus science/octopus: builds fine on aarch64 2024-10-30 10:00:37 +01:00
openbabel */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
openems */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
openkim-models
openmc science/openmc: Broken on 15 with clang-19; Update WWW 2024-11-04 12:36:50 -08:00
openmodelica science/openmodelica: update 1.23.1 → 1.24.0 2024-10-10 01:25:20 -07:00
openmolcas
openmx
opensim-core
opensph science/opensph: port to aarch64 2024-10-21 11:36:01 +02:00
opsin
optench
orthanc devel/protobuf: Update to 28.3 2024-10-29 22:38:30 +08:00
orthanc-dicomweb science/orthanc-dicomweb: unbreak build with boost-1.85 2024-10-03 13:24:57 +03:00
orthanc-mysql science/orthanc-mysql: unbreak build with boost-1.85 2024-10-03 13:24:58 +03:00
orthanc-postgresql science/orthanc-postgresql: unbreak build with boost-1.85 2024-10-03 13:24:58 +03:00
orthanc-webviewer science/orthanc-webviewer: unbreak build with boost-1.85 2024-10-03 13:24:59 +03:00
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Calc
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-Coordinates-Transform
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit science/p5-Physics-Unit: Update to 0.60 2024-11-03 21:23:29 +08:00
packmol
pagmo2 */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
paje all: drop support for expired FreeBSD 14.0 2024-10-01 20:56:20 +02:00
paraview devel/protobuf: Update to 28.3 2024-10-29 22:38:30 +08:00
parthenon science/parthenon: Use external kokkos instead of the bundled one 2024-09-09 08:42:54 -07:00
pastix
pcmsolver science/pcmsolver: Broken on 15 with clang-19 2024-11-02 21:44:18 -07:00
PETSc science/PETSc: update 3.22.0 → 3.22.1 2024-10-29 23:29:18 -07:00
phonopy science/{,py-}phonopy: update 2.27.0 → 2.28.0 2024-09-13 01:24:49 -07:00
plumed
pnetcdf
polytope
precice */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
psi4
pulseview */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
py-abipy science/py-abipy: update 0.9.6 → 0.9.8 2024-09-16 00:48:27 -07:00
py-access
py-arbor
py-arch
py-asap3
py-asdf science/py-asdf: Update to 3.5.0 2024-10-14 13:25:44 +08:00
py-asdf-standard
py-asdf-transform-schemas
py-ase
py-atomium
py-avogadrolibs
py-boutdata
py-boututils
py-cdo
py-cfgrib science/py-cfgrib: Update to 0.9.14.1 2024-09-25 12:22:36 +08:00
py-chainer devel/protobuf: Update to 28.3 2024-10-29 22:38:30 +08:00
py-chainer-chemistry
py-chempy
py-cirq-aqt
py-cirq-core
py-cirq-google
py-cirq-ionq
py-cirq-pasqal
py-cirq-rigetti
py-coards
py-DendroPy
py-dftbplus
py-dftd4
py-dimod
py-dipy
py-dlib science/py-dlib: fix build with libc++ 19 2024-11-04 08:37:27 +01:00
py-dwave-cloud-client
py-dwave-greedy
py-dwave-hybrid
py-dwave-inspector
py-dwave-neal
py-dwave-networkx
py-dwave-ocean-sdk
py-dwave-optimization
py-dwave-preprocessing
py-dwave-samplers
py-dwave-system
py-dwave-tabu
py-dwavebinarycsp
py-earthpy
py-eccodes science/py-eccodes: Update to 2.38.3 2024-10-21 17:17:29 +08:00
py-emmet-core
py-esda
py-fresnel
py-gemmi
py-geolinks
py-geomet
py-geometer
py-geometric
py-gpaw
py-GPy
py-GPyOpt
py-gsd science/py-gsd: update 3.3.2 → 3.4.1 2024-10-23 02:44:45 -07:00
py-h5json
py-h5py science/py-h5py: Update to 3.12.1 2024-10-14 13:25:44 +08:00
py-h5pyd
py-HepMC3
py-hiphive
py-HofstadterTools
py-hoomd-blue science/py-hoomd-blue: Fix build with LLVM 19 2024-11-03 12:55:10 -05:00
py-inequality
py-ipygany
py-jupyter_jsmol
py-kim-query
py-kimpy science/py-kimpy: update 2.1.0 → 2.1.1 2024-09-16 00:48:26 -07:00
py-kinematics
py-kliff
py-kpLib
py-liac-arff
py-libgetar
py-libpysal
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mercantile
py-meshio
py-mmcif
py-mmtf-python
py-molmod
py-moltemplate
py-mp-api
py-mpcontribs-client
py-mplhep
py-mplhep-data
py-mrchem
py-ncrystal science/{,py-}ncrystal: update 3.9.6 → 3.9.7 2024-09-25 01:33:35 -07:00
py-netCDF4
py-netcdf-flattener
py-nglview
py-nibabel science/py-nibabel: update 5.2.1 → 5.3.0 2024-10-09 18:34:05 -07:00
py-nilearn science/py-nilearn: expire on 2024-12-31 for devel/py-codecov 2024-09-30 21:37:15 +02:00
py-obspy
py-oddt
py-openbabel all: drop support for expired FreeBSD 14.0 2024-10-01 20:56:20 +02:00
py-openEMS
py-OpenFermion
py-OpenFermion-Dirac
py-OpenFermion-PySCF
py-OpenMC
py-openpiv
py-optking science/py-optking: update 0.2.1 → 0.3.0 2024-09-16 00:48:25 -07:00
py-paida
py-paramz
py-penaltymodel
py-periodictable
py-phono3py
py-phonopy science/{,py-}phonopy: update 2.27.0 → 2.28.0 2024-09-13 01:24:49 -07:00
py-PubChemPy
py-pupynere
py-py3Dmol
py-pyaixi
py-pyberny
py-pycsw
py-pydicom science/py-pydicom: update 3.0.1 2024-10-14 06:32:50 +00:00
py-PyFR
py-pygeodesy
py-pygeometa
py-pygmo2 */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
py-pyked
py-pymatgen
py-pymatgen-analysis-alloys
py-pymbd
py-pymol
py-PyNE
py-pyosf
py-pyphot science/py-pyphot: New port: Library for computing photometry from spectra 2024-09-21 22:51:20 -07:00
py-pyprecice
py-pyqubo
py-pysal
py-pyscf science/py-pyscf: update 2.6.2 → 2.7.0 2024-09-27 01:38:48 -07:00
py-pyteomics science/py-pyteomics: Update to 4.7.5 2024-10-25 23:56:47 +08:00
py-qcelemental
py-qcengine
py-qspin
py-quantities science/py-quantities: update 0.15.0 → 0.16.0 2024-09-24 01:43:28 -07:00
py-rmf
py-rmsd
py-ruffus
py-sarpy science/py-sarpy: Add ALL option 2024-10-18 03:03:16 +08:00
py-scikit-fuzzy
py-scikit-learn
py-scikit-optimize science/py-scikit-optimize: Update to 0.10.2 2024-09-30 21:36:36 +08:00
py-scikit-sparse
py-scimath
py-scipy science/py-scipy: Remove unnecessary substitution 2024-09-09 03:43:18 +08:00
py-scoria
py-sdf
py-segregation
py-segyio
py-signac
py-SimpleSpectral
py-sklearn-pandas
py-skrebate
py-spaghetti
py-spglib science/py-spglib: Remove workaround for the _version_ symbol; Add missing dependency 2024-09-13 01:24:48 -07:00
py-tensorflow */*: Bump dependencioes after devel/jsoncpp update 2024-09-12 09:20:06 -07:00
py-thewalrus
py-tobler
py-trainstation
py-trx-python
py-tweedledum
py-vedo
py-veusz */*: Chase removal of sip from RUN_DEPENDS 2024-10-19 03:33:57 -04:00
py-xbout
pybrain
pynn
q
qbox textproc/xerces-c3: Update to 3.3.0 2024-10-25 23:56:41 +08:00
qcl
qiskit-aer
qmcpack */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
qt6-quick3dphysics Qt6: Update to 6.7.3 2024-09-29 03:05:40 -04:00
quantum-espresso
quantum-espresso-pseudopotentials
quantum-jet
qwalk
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071 science/R-cran-e1071: Update to 1.7-16 2024-09-19 09:24:55 +01:00
R-cran-eco
R-cran-Epi science/R-cran-Epi: Update to 2.56 2024-10-06 07:36:27 +00:00
R-cran-epicalc
R-cran-etm
R-cran-FAdist
R-cran-fastICA science/R-cran-fastICA: drop maintainership 2024-09-14 18:42:16 -04:00
R-cran-kernlab
R-cran-ks
R-cran-snow
R-cran-som science/R-cran-som: Update to 0.3-5.2 2024-09-22 11:04:08 +00:00
R-cran-udunits2
rdkit */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
rmf */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-netcdf
salome-configuration
salome-kernel */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
scidavis science/scidavis: makr broken with PYTHON option 2024-10-24 15:26:07 +03:00
sciplot
seacas science/seacas: New port: Sandia Engineering Analysis Code Access System (SEACAS) 2024-10-31 13:34:04 -07:00
segyio
serac
shelxle science/shelxle: update 1.0.1678 → 1.0.1680 2024-09-27 01:38:48 -07:00
siconos
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody
simgrid */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
simint
simlib
simple-dftd3 science/simple-dftd3: update 1.1.0 → 1.1.1 2024-09-20 22:01:17 -07:00
simsmith
sirius
smoldyn science/smoldyn: Fix build with tiff 4.7.0 2024-10-09 21:43:26 +02:00
sparta
spglib
spheral */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
step science/step: Fix build with LLVM >= 19.1.0-rc1 2024-10-30 04:40:48 -04:00
tblite
teem
tfel */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
tfel-edf */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
thermofun
tinker
trilinos science/trilinos: Broken on 15 with clanmg-19 2024-11-03 19:46:39 -08:00
ttk */*: Bump dependencioes after devel/jsoncpp update 2024-09-12 09:20:06 -07:00
tweedledum
udunits
ukrmol+
v_sim
vipster
vmd
voro++
votca */*: bump consumers after devel/boost* update 2024-10-03 13:25:14 +03:00
wannier90
wwplot
wxmacmolplt
xcfun
xcrysden
xdrawchem
xtb
yoda
zotero science/zotero: Really fix plist 2024-09-08 09:54:46 +02:00
zx
Makefile science/seacas: New port: Sandia Engineering Analysis Code Access System (SEACAS) 2024-10-31 13:34:04 -07:00