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freebsd-ports/biology
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Philip M. Gollucci 8563ed7899 - fix fetch: wget is not required for fetching 
Reported by:    QAT
2010-12-12 08:10:05 +00:00
..
adun
LICENSE GPLv2
2010-06-05 19:53:32 +00:00
ariadne
…
artemis
Bump portrevision due to upgrade of devel/gettext.
2008-06-06 13:08:29 +00:00
avida
Also broken on sparc64 (and, by implication, ia64).
2010-09-17 09:17:05 +00:00
babel
Mark various ports as broken or ignore on powerpc.
2010-04-01 05:16:19 +00:00
belvu
…
biococoa
LICENSE LGPL21
2010-06-05 06:14:28 +00:00
biojava
- Update to 1.7
2009-05-01 09:33:42 +00:00
blast
- SUB_FILES += pkg-message
2010-01-09 23:51:26 +00:00
blat
- Remove USE_GCC where it can be satisfied with base compiler on following
2008-07-25 14:34:52 +00:00
boinc-simap
- Update the libmap instructions for amd64/8
2010-07-29 08:30:24 +00:00
chemeq
…
clustalw
- Update to 2.1
2010-11-22 00:15:25 +00:00
consed
Welcome to the new linux ports infrastructure which allows using
2009-03-19 17:28:51 +00:00
crimap
- actually remove old patch
2010-01-17 00:16:34 +00:00
crux
Update to Crux 1.2.0.
2009-09-19 17:58:13 +00:00
distribfold
…
dna-qc
BROKEN should not be quoted.
2010-06-13 08:40:06 +00:00
dotter
- Removed BROKEN because file fetches and checksums correctly
2010-04-28 22:37:11 +00:00
embassy
- Update to 6.2.0
2010-04-07 01:21:36 +00:00
emboss
Sync to new bsd.autotools.mk
2010-12-04 07:34:27 +00:00
fasta
Mark various ports as broken or ignore on powerpc.
2010-04-01 05:16:19 +00:00
fasta3
Update to 35.4.9
2009-08-23 15:47:37 +00:00
fastdnaml
…
finchtv
…
fluctuate
For ports maintained by ports@FreeBSD.org, remove names and/or
2009-12-21 02:19:12 +00:00
garlic
- Remove unneeded dependency from gtk12/gtk20 [1]
2008-04-19 17:56:05 +00:00
genpak
- update to 1.4.1
2010-03-28 06:47:48 +00:00
gff2ps
Bump portrevision due to upgrade of devel/gettext.
2008-06-06 13:08:29 +00:00
gmap
- fix fetch: wget is not required for fetching
2010-12-12 08:10:05 +00:00
gperiodic
Bounce PORTREVISION for gettext-related ports. Have fun, ya'll.
2010-05-31 02:01:56 +00:00
grappa
…
hmmer
- Update download locations, update WWW
2009-02-01 08:17:14 +00:00
iolib
Sync to new bsd.autotools.mk
2010-12-04 07:34:27 +00:00
jalview
Bump portrevision due to upgrade of devel/gettext.
2008-06-06 13:08:29 +00:00
kinemage
- Remove unneeded dependency from gtk12/gtk20 [1]
2008-04-19 17:56:05 +00:00
L-Breeder
- update to 1.4.1
2010-03-28 06:47:48 +00:00
lagan
- Unbreak build: CPP is now part of MAKE_ENV
2010-11-08 15:05:11 +00:00
lamarc
- Update to 2.1.5
2010-08-04 06:30:07 +00:00
libgenome
Sync to new bsd.autotools.mk
2010-12-04 07:34:27 +00:00
libsbml
- Update to 4.2.0
2010-10-08 02:06:53 +00:00
linux-foldingathome
Improve port description.
2010-11-29 08:17:34 +00:00
lsysexp
- update to 1.4.1
2010-03-28 06:47:48 +00:00
mafft
- Update download locations, update WWW
2009-02-04 03:31:00 +00:00
mapm3
- Mark MAKE_JOBS_UNSAFE
2009-11-20 22:53:09 +00:00
migrate
- Add an additional MASTER_SITES
2010-10-01 01:06:46 +00:00
molden
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
2009-09-13 00:08:01 +00:00
mopac
Sync to new bsd.autotools.mk
2010-12-04 07:34:27 +00:00
mrbayes
Fix LIB_DEPENDS on devel/readline: its sh lib version was bumped recently from
2009-05-12 11:28:17 +00:00
mummer
- Update to 3.22
2010-03-21 17:18:20 +00:00
muscle
- Update maintainer's email address
2008-05-17 16:52:34 +00:00
ncbi-toolkit
- use $SUB_FILES to dynamically adjust pkg-message
2010-01-31 03:42:20 +00:00
njplot
Convert most of remaining ports that depend on xorg-libraries to
2009-06-09 15:33:28 +00:00
ortep3
For ports maintained by ports@FreeBSD.org, remove names and/or
2009-12-21 02:19:12 +00:00
p5-AcePerl
- Remove unneeded dependencies which is in perl-5.8.9 dist
2010-01-29 14:52:21 +00:00
p5-Bio-ASN1-EntrezGene
- Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_CPAN} to CPAN.
2008-04-17 14:30:31 +00:00
p5-Bio-Das
Change dependency on old p5-Compress-Zlib, p5-IO-Compress-Base,
2010-09-21 07:56:43 +00:00
p5-Bio-Das-Lite
- Update to 2.10
2010-11-04 06:24:22 +00:00
p5-Bio-Glite
- Remove unneeded dependencies which is in perl-5.8.9 dist
2010-01-29 14:52:21 +00:00
p5-Bio-Graphics
- Also remove them from pkg-plist lists not from me that crept in
2010-11-24 06:19:46 +00:00
p5-Bio-MAGETAB
- Update to 1.13
2010-09-07 07:00:17 +00:00
p5-Bio-NEXUS
- Update to 0.76
2010-09-25 08:14:02 +00:00
p5-Bio-Phylo
- Update to 0.31
2010-11-22 08:50:39 +00:00
p5-Bio-SCF
- Update to 1.03
2010-01-09 01:21:21 +00:00
p5-bioperl
- update to 1.4.1
2010-03-28 06:47:48 +00:00
p5-bioperl-run
- update to 1.4.1
2010-03-28 06:47:48 +00:00
paml
- Update to 4.4c
2010-09-08 00:16:45 +00:00
phd2fasta
Teach the building cluster that these ports are not to be build
2008-05-25 23:05:10 +00:00
phrap
Teach the building cluster that these ports are not to be build
2008-05-25 23:05:10 +00:00
phred
Teach the building cluster that these ports are not to be build
2008-05-25 23:05:10 +00:00
phylip
For ports maintained by ports@FreeBSD.org, remove names and/or
2009-12-21 02:19:12 +00:00
phyml
Sync to new bsd.autotools.mk
2010-12-04 07:34:27 +00:00
platon
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
2009-09-13 00:08:01 +00:00
povchem
- update to 1.4.1
2010-03-28 06:47:48 +00:00
primer3
- Update to 1.1.4
2009-12-18 02:55:57 +00:00
protomol
- update to 1.4.1
2010-03-28 06:47:48 +00:00
psi88
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
2009-09-13 00:08:01 +00:00
py-biopython
- Update to 1.54
2010-07-02 02:57:19 +00:00
pycogent
- Update to 1.5.0
2010-11-10 08:52:26 +00:00
pyfasta
- Update to 0.4.1
2010-12-02 13:42:09 +00:00
pymol
Update to 1.3r1.3913.
2010-09-16 21:48:04 +00:00
python-nexus
- Update to 0.7
2010-02-24 01:30:46 +00:00
rasmol
Convert most of remaining ports that depend on xorg-libraries to
2009-06-09 15:33:28 +00:00
recombine
For ports maintained by ports@FreeBSD.org, remove names and/or
2009-12-21 02:19:12 +00:00
ruby-bio
- Update to 1.4.0
2010-06-08 00:18:54 +00:00
seaview
- update to 1.4.1
2010-03-28 06:47:48 +00:00
seqio
For ports maintained by ports@FreeBSD.org, remove names and/or
2009-12-21 02:19:12 +00:00
sim4
…
ssaha
- Fix plist files installation.
2008-06-21 02:46:21 +00:00
t_coffee
- Respect PORTDOCS/PORTEXAMPLES
2008-09-09 13:43:15 +00:00
tinker
- Unbreak by removing some old and adding some new master sites
2010-10-30 23:51:30 +00:00
treepuzzle
Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.
2008-08-21 06:18:49 +00:00
treeviewx
- update to 1.4.1
2010-03-28 06:47:48 +00:00
tRNAscan-SE
- Update MASTER_SITES and WWW: line
2008-05-22 00:49:42 +00:00
velvet
Velvet is a de novo genomic assembler specially designed for short read
2009-11-07 01:23:59 +00:00
wise
Fix plist.
2010-11-16 23:55:41 +00:00
xdrawchem
- update to 1.4.1
2010-03-28 06:47:48 +00:00
xmolwt
Bump portrevision due to upgrade of devel/gettext.
2008-06-06 13:08:29 +00:00
Makefile
p5-Bio-Das-Lite is an implementation of a client for the DAS protocol (XML
2010-03-01 09:16:25 +00:00