Yuri Victorovich 635f49c9fd biology/seqkit: Update 0.16.0 -> 0.16.1 ... Reported by: portscout		2021-05-19 23:02:26 -07:00
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abyss
ad2vcf
artemis
avida
babel
bamtools
bbmap
bcftools
bedtools
bioawk
biococoa
biolibc
bioparser
biosoup
bolt-lmm
bowtie
bowtie2	biology/bowtie2: Update to 2.4.3	2021-05-17 18:40:15 -05:00
bwa
canu
cd-hit
cdbfasta
checkm
clustal-omega
clustalw
cufflinks
cytoscape	biology/cytoscape: mark unconditionally BROKEN	2021-05-12 14:55:52 +03:00
ddocent
diamond
dsr-pdb
edlib
emboss
exonerate
fasta
fasta3
fastahack
fastdnaml
fastool
fastp
fastqc
fasttree
fastx-toolkit
figtree
fluctuate
freebayes
garlic
gatk
gcta
gemma
generand
gff2ps
gmap
gperiodic
graphlan
groopm
haplohseq
hhsuite
hisat2
hmmer
htslib
hyphy
igv
infernal
iolib	biology/iolib: Drop maintainership	2021-05-19 20:56:24 +01:00
iqtree
jalview
jellyfish
kallisto
lamarc
libbigwig
libgtextutils
libsbml	biology/libsbml: Rename LIBXML option to LIBXML2	2021-05-12 05:46:56 +08:00
linux-foldingathome
mafft
mapm3
migrate
minimap2
molden
mopac
mothur
mrbayes	*: Remove unnecessary 'port' argument from USES=readline	2021-05-15 09:14:04 +02:00
mummer
muscle
ncbi-blast+
ncbi-cxx-toolkit
ncbi-entrez-direct
ncbi-toolkit
ncbi-vdb
ngs-sdk
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
pbseqan
pear-merger
phrap
phred
phyml
picard-tools
plink
pooler
primer3
prodigal
prodigy-lig
protomol
psi88
py-bigwig
py-biom-format
py-biopython
py-bx-python
py-crossmap
py-cutadapt
py-dnaio
py-ete3
py-Genesis-PyAPI
py-gffutils
py-gtfparse
py-hits
py-loompy
py-macs2
py-multiqc
py-orange3-bioinformatics
py-orange3-single-cell
py-pandas-charm
py-pyfaidx
py-pysam
py-resdk
py-scikit-bio
py-xenaPython
pyfasta
python-nexus
rainbow
rampler
readseq
recombine
ruby-bio
rubygem-bio
rubygem-bio-executables
rubygem-bio-old-biofetch-emulator
rubygem-bio-shell
samtools
scrm
seaview
seqan
seqan1
seqan3	biology/seqan3: Correct dependencies	2021-05-11 22:46:21 -07:00
seqan-apps
seqio
seqkit	biology/seqkit: Update 0.16.0 -> 0.16.1	2021-05-19 23:02:26 -07:00
seqtk
sim4
slclust
smithwaterman
snpeff
spoa
stacks
star
stringtie
subread
tabixpp
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ucsc-userapps	biology/ucsc-userapps: Update to v414	2021-05-15 10:23:08 -05:00
ugene	- Update Unipro UGENE to version 38.1 and thus unbreak	2021-05-18 15:24:55 +00:00
vcf2hap
vcf-split
vcflib
vcftools
velvet
viennarna
vsearch
vt
wise
Makefile	New port: biology/seqan3: C++ header-only library for biological sequence analysis	2021-05-11 18:21:38 -07:00