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freebsd-ports/science
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Martin Wilke 6ff86f1226 - Update to 0.4d 
PR:		176547
Submitted by:	ports fury
2013-03-02 06:30:55 +00:00
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2d-rewriter
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2dhf
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abinit
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afni
update the R base ports to 2.15.2 and adjust dependent ports
2013-01-04 17:51:39 +00:00
avogadro
science/openbabel:
2012-12-11 14:19:54 +00:00
bddsolve
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bft
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bodr
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brian
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buddy
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cdcl
Update to 5.4.7
2012-12-19 03:01:41 +00:00
cdf
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cdo
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cgnslib
Fix HDF5 description.
2012-12-10 18:20:15 +00:00
checkmol
- Update to 0.4d
2013-03-02 06:30:55 +00:00
chemical-mime-data
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chemtool
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chemtool-devel
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clhep
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colt
Decommissioning java 1.5 (EOLed since October 2009):
2012-12-10 13:43:43 +00:00
crf++
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dcl
- Update to 5.4.7
2012-12-13 02:25:38 +00:00
devisor
Decommissioning java 1.5 (EOLed since October 2009):
2012-12-10 13:43:43 +00:00
dlpoly-classic
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dtiquery
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ecs
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elmer-eio
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elmer-hutiter
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elmer-matc
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elmer-meshgen2d
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elmergrid
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elmerpost
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epte
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euler
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fastcap
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fasthenry
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felt
- Update to version 3.07
2012-12-01 00:00:12 +00:00
flounder
- Fix build with clang
2012-12-23 19:11:12 +00:00
fvcom
Add new ports science/fvcom and science/fvcom-mpi:
2013-02-20 17:30:45 +00:00
fvcom-mpi
Add new ports science/fvcom and science/fvcom-mpi:
2013-02-20 17:30:45 +00:00
fvm
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g3data
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gamess
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gchemutils
science/openbabel:
2012-12-11 14:19:54 +00:00
gdis
- Update to 0.90
2013-03-02 06:29:42 +00:00
getdp
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ghemical
Update to 3.0.0.
2013-01-08 10:50:11 +00:00
ghmm
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gnudatalanguage
- remove an obsoleted dependency on py-numarray;
2013-01-05 14:28:32 +00:00
gramps
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gromacs
- Update to 4.6
2013-02-10 07:56:49 +00:00
gsmc
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gsystem
- Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8
2012-12-30 12:03:51 +00:00
gtamsanalyzer
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gwyddion
- Chase lib version changes from ilmbase and OpenEXR updates
2013-01-17 16:05:38 +00:00
h5utils
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harminv
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hdf
- Update to 4.2.8.
2012-12-20 05:41:13 +00:00
hdf5
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hdf5-18
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hdf-java
Convert to new option framework
2012-12-13 10:47:44 +00:00
hs-bio
- Fix breakage in the DYNAMIC-enabled ports triggered by the recent
2013-02-05 22:26:31 +00:00
InsightToolkit
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isaac-cfd
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jmol
Decommissioning java 1.5 (EOLed since October 2009):
2012-12-10 13:43:43 +00:00
jstrack
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kalzium
KDE/FreeBSD team presents KDE SC 4.9.5 ports!
2013-02-03 20:10:37 +00:00
kmovisto
- Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8
2012-12-30 12:03:51 +00:00
kst
- Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8
2012-12-30 12:03:51 +00:00
kst2
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lamprop
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libctl
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libghemical
* Update to 3.0.0.
2013-01-08 06:53:51 +00:00
libint
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libkml
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liblinear
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liboglappth
update to 1.0.0.
2013-01-08 07:13:23 +00:00
libquantum
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libsvm
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libsvm-python
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linsmith
- Fix build with clang
2013-02-07 14:36:55 +00:00
massxpert
- Update to 3.4.0
2013-02-09 14:02:02 +00:00
mayavi
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mbdyn
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mcstas
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medit
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meep
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mei
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minc
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minc2
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mol2ps
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mpb
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mpqc
Fix recent build on tinderbox. Somehow "sc_PsiCCSD_T.3" is not
2013-01-08 04:49:03 +00:00
mpqc-mpich
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ncs
Bump PORTREVISON after devel/py-sip and devel/qscintilla2 update.
2013-02-03 18:16:54 +00:00
netcdf
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netcdf3-ftn
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netcdf4
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netcdf-ftn
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nifticlib
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omnetpp
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openbabel
science/openbabel:
2012-12-11 14:19:54 +00:00
ovt
Decommissioning java 1.5 (EOLed since October 2009):
2012-12-10 13:43:43 +00:00
p5-Algorithm-SVMLight
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p5-Chemistry-3DBuilder
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p5-Chemistry-Bond-Find
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p5-Chemistry-Canonicalize
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p5-Chemistry-Elements
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p5-Chemistry-File-MDLMol
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p5-Chemistry-File-Mopac
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p5-Chemistry-File-PDB
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p5-Chemistry-File-SLN
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p5-Chemistry-File-SMARTS
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p5-Chemistry-File-SMILES
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p5-Chemistry-File-VRML
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p5-Chemistry-File-XYZ
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p5-Chemistry-FormulaPattern
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p5-Chemistry-InternalCoords
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p5-Chemistry-Isotope
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p5-Chemistry-MacroMol
- Trim Makefile headers
2012-12-07 07:13:56 +00:00
p5-Chemistry-MidasPattern
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p5-Chemistry-Mok
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p5-Chemistry-Mol
- Trim Makefile headers
2012-12-06 02:12:52 +00:00
p5-Chemistry-Pattern
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p5-Chemistry-Reaction
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p5-Chemistry-Ring
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p5-Geo-BUFR
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p5-Geo-Coordinates-Converter
Cleanup supporting perl version 5.8 and 5.10,
2012-12-17 06:15:27 +00:00
p5-Geo-Coordinates-Converter-iArea
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p5-Geo-ReadGRIB
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p5-Geo-WebService-Elevation-USGS
Update to 0.011.
2013-01-29 08:50:49 +00:00
p5-PerlMol
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p5-Physics-Unit
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paje
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paraview
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peekabot
Chase boost update
2013-01-31 13:38:42 +00:00
pnetcdf
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psi3
- Fix all cases of 'No newline at end of file' in ports tree
2013-02-01 15:04:00 +00:00
psychopy
- Update to 1.75.01
2013-01-15 06:22:00 +00:00
py-biolccc
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py-DendroPy
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py-h5py
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py-hcluster
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py-mdp
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py-mlpy
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py-netCDF4
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py-obspy-core
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py-obspy.db
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py-obspy.gse2
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py-obspy.imaging
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py-obspy.iris
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py-obspy.mseed
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py-obspy.signal
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py-obspy.taup
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py-obspy.wav
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py-obspy.xseed
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py-paida
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py-pydicom
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py-scikit-learn
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py-scimath
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py-scipy
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py-ws2300
- Update to 1.7 [1]
2012-12-09 13:19:39 +00:00
pybrain
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pycdf
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pynn
- Update to 0.7.5
2013-03-02 05:49:40 +00:00
qcl
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qtresistors
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R-cran-AMORE
update the R base ports to 2.15.2 and adjust dependent ports
2013-01-04 17:51:39 +00:00
R-cran-bayesm
update the R base ports to 2.15.2 and adjust dependent ports
2013-01-04 17:51:39 +00:00
R-cran-DCluster
- Update to 0.2-6
2013-01-08 12:39:31 +00:00
R-cran-e1071
update the R base ports to 2.15.2 and adjust dependent ports
2013-01-04 17:51:39 +00:00
R-cran-eco
update the R base ports to 2.15.2 and adjust dependent ports
2013-01-04 17:51:39 +00:00
R-cran-Epi
- Update to 1.1.44
2013-02-09 01:30:13 +00:00
R-cran-epicalc
update the R base ports to 2.15.2 and adjust dependent ports
2013-01-04 17:51:39 +00:00
R-cran-snow
update the R base ports to 2.15.2 and adjust dependent ports
2013-01-04 17:51:39 +00:00
R-cran-som
update the R base ports to 2.15.2 and adjust dependent ports
2013-01-04 17:51:39 +00:00
ruby-dcl
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ruby-gphys
- Update to 1.2.2
2013-01-22 03:31:11 +00:00
ruby-netcdf
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rubygem-ai4r
- Add patch to fix build
2013-02-26 02:34:03 +00:00
silo
- Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8
2012-12-30 12:03:51 +00:00
simlib
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step
KDE/FreeBSD team presents KDE SC 4.9.5 ports!
2013-02-03 20:10:37 +00:00
svmlight
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szip
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udunits
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v_sim
science/openbabel:
2012-12-11 14:19:54 +00:00
veusz
Bump PORTREVISON after devel/py-sip and devel/qscintilla2 update.
2013-02-03 18:16:54 +00:00
vmd
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x11iraf
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xmakemol
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xmds
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Makefile
Add new ports science/fvcom and science/fvcom-mpi:
2013-02-20 17:30:45 +00:00