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42 lines
1000 B
Makefile
42 lines
1000 B
Makefile
PORTNAME= haplohseq
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DISTVERSION= 0.1.2
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PORTREVISION= 3
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CATEGORIES= biology
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Identify regions of allelic imbalance
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LICENSE= MIT
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LIB_DEPENDS= libboost_system.so:devel/boost-libs
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RUN_DEPENDS= R-cran-optparse>0:devel/R-cran-optparse
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USES= compiler:c++11-lang gmake localbase:ldflags python:3.6+
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USE_GITHUB= yes
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GH_ACCOUNT= outpaddling
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OPTIONS_DEFINE= EXAMPLES
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MAKEFILE= makefile
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LDFLAGS+= -lpthread
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MAKE_ENV= STRIP=${STRIP}
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SUB_FILES= haplohseq-example
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pre-configure:
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@${REINPLACE_CMD} \
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-e 's|/bin/bash|/bin/sh|' \
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-e 's|python|mkdir example_output; ${PYTHON_CMD}|' \
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-e 's|\.\./haplohseq|haplohseq|' \
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${WRKSRC}/example/example_run.sh
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post-install-EXAMPLES-on:
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${INSTALL_SCRIPT} ${WRKDIR}/haplohseq-example ${STAGEDIR}${PREFIX}/bin
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(cd ${WRKSRC} && ${RM} example/*.orig scripts/*.orig && ${COPYTREE_SHARE} "example ldmap scripts" ${STAGEDIR}${EXAMPLESDIR})
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do-test:
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@(cd ${WRKSRC}/build/test && ${FILESDIR}/run-tests)
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.include <bsd.port.mk>
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