Boris Samorodov 4392a3472d . NOPORTDOCS -> PORT_OPTIONS:MDOCS; ... . use PLIST_FILES and PORTDOCS; . get rid of pkg-plist; . pet portlint: use one space after WWW: at pkg-descr; . trim Makefile headers; . remove the indefinite article from COMMENT.		2013-06-19 12:43:28 +00:00
..
adun
ariadne
artemis	Decommissioning java 1.5 (EOLed since October 2009):	2012-12-10 11:25:27 +00:00
avida	- Fix build with clang	2013-06-04 08:26:03 +00:00
babel	- Mark conflict with science/openbabel	2012-12-11 14:24:51 +00:00
biococoa
biojava	Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIP	2012-12-11 07:26:38 +00:00
blast
blat
boinc-simap	Use bsd.port.options.mk instead of bsd.port.{pre|post}.mk	2013-04-29 12:20:35 +00:00
chemeq	Convert USE_BISON to USES= bison	2013-03-08 11:32:11 +00:00
clustalw
consed
crux	- adoption of optionsNG	2013-03-18 06:48:55 +00:00
dotter	- Mark broken checksum mismatch	2013-03-25 01:41:31 +00:00
embassy	- Convert USE_ICONV=yes to USES=iconv	2013-04-27 08:50:46 +00:00
emboss
fasta
fasta3
fastdnaml
finchtv
fluctuate	. NOPORTDOCS -> PORT_OPTIONS:MDOCS;	2013-06-19 12:43:28 +00:00
garlic
genpak
gff2ps
gmap
gperiodic	- Convert USE_GETTEXT to USES (part 3)	2013-04-24 18:10:30 +00:00
grappa
hmmer
iolib	- Update to 1.13.0	2013-04-30 15:41:49 +00:00
jalview	Decommissioning java 1.5 (EOLed since October 2009):	2012-12-10 11:25:27 +00:00
lagan
lamarc	- Fix build with clang	2012-12-03 11:27:47 +00:00
libgenome
libsbml	- adoption of optionsNG	2013-03-18 06:50:12 +00:00
linux-foldingathome
mafft
mapm3
migrate	- Update to 3.5.1	2013-05-26 07:49:47 +00:00
molden	- Update to 5.0.6	2013-04-26 06:57:37 +00:00
mopac	Workaround the way mopac installs executables.	2013-04-29 17:30:09 +00:00
mrbayes
mummer
muscle
ncbi-toolkit	- Update to 2012.06.20	2013-03-14 05:27:58 +00:00
njplot
ortep3
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Das	Cleanup supporting perl version 5.8 and 5.10,	2012-12-17 15:39:36 +00:00
p5-Bio-Das-Lite
p5-Bio-GFF3	- Update to 1.5	2012-12-16 04:22:15 +00:00
p5-Bio-Glite	For perl@ owned ports:	2013-03-29 00:44:53 +00:00
p5-Bio-Graphics	Add missing item to pkg-plist reported by QAT but not reported by poudriere.	2013-03-03 15:22:43 +00:00
p5-Bio-MAGETAB	For perl@ owned ports:	2013-03-29 00:44:53 +00:00
p5-Bio-NEXUS	For perl@ owned ports:	2013-03-29 00:44:53 +00:00
p5-Bio-Phylo	- Update to 0.52 [1]	2013-02-16 14:58:51 +00:00
p5-Bio-SCF	- Trim Makefile headers	2013-06-01 14:22:35 +00:00
p5-bioperl	- Avoid of using SITE_PERL	2013-06-07 06:51:42 +00:00
p5-bioperl-run
paml	- Trim Makefile headers	2013-06-01 14:22:35 +00:00
phd2fasta	Remove unneeded escaping	2013-04-26 16:23:13 +00:00
phrap
phred
phylip	- Update to 3.6.9.5	2013-06-04 10:02:30 +00:00
phyml	- Update to 20121109.	2013-02-04 10:07:30 +00:00
platon
plink
plinkseq	Fix build with protobuf-2.5.0	2013-03-21 14:09:22 +00:00
povchem	- remove empty files	2013-02-15 08:57:19 +00:00
primer3
protomol	- adoption of optionsNG	2013-03-18 06:54:39 +00:00
psi88
py-biopython
pycogent
pyfasta	- Trim Makefile headers	2013-06-01 14:22:35 +00:00
pymol
python-nexus
rasmol
recombine
ruby-bio	- adoption of optionsNG	2013-03-18 06:55:42 +00:00
seaview	- Update to 4.4.1	2013-03-26 01:08:40 +00:00
seqan	- convert USE_CMAKE to USES	2013-03-22 20:06:14 +00:00
seqio
sim4
ssaha
t_coffee	- Update to 9.03.	2013-01-14 08:04:38 +00:00
tinker	- Update to 6.2.05	2013-05-29 05:25:49 +00:00
treepuzzle
treeviewx
tRNAscan-SE
ugene	Unbreak on 7.X and i386 systems.	2013-02-25 13:00:15 +00:00
velvet
wise	Fix build by adding an explicit dep on pkgconf	2013-05-03 20:48:34 +00:00
xdrawchem	- Strip header at request of original creator	2013-01-27 05:55:20 +00:00
xmolwt	Finish converting the whole ports tree to USES=pkgconfig	2013-04-23 14:20:25 +00:00
Makefile	Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.	2013-02-23 04:50:48 +00:00