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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-23 04:23:08 +00:00
freebsd-ports/science
2020-05-21 07:17:55 +00:00
..
2d-rewriter
abinit Re-add port: science/abinit: Full-featured atomic-scale first-principles simulation software 2020-05-19 08:21:37 +00:00
afni Mark as BROKEN on powerpc64: 2020-05-18 01:29:41 +00:00
agrum science/agrum: fix build on GCC architectures 2020-05-01 02:42:36 +00:00
aircraft-datcom
ALPSCore
antioch
apbs
atompaw
avogadro2
avogadrolibs
bagel
bddsolve
berkeleygw Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
bodr
brian
buddy
cdcl
cdf
cdk
cdo Remove ACCEPT_USE_OF_DEPRECATED_PROJ_API_H 2020-05-16 10:51:44 +00:00
cgnslib
cgribex Update to 1.9.4 2020-05-16 10:51:49 +00:00
checkmol
chemical-mime-data
chemps2 Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
chemtool
chemtool-devel
chrono
clhep
clipper
code_saturne Update Sphinx 2020-05-11 23:51:58 +00:00
colt
coordgenlibs science/coordgenlibs: Update 1.4.0 -> 1.4.0-6; Fix the missing file templates.mae problem 2020-05-10 19:36:07 +00:00
cp2k Re-add port: science/cp2k: Quantum chemistry and solid state physics software package; Update 6.1.0 -> 7.1.0-20200518 2020-05-20 02:27:15 +00:00
cp2k-data
crf++
dalton Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
datawarrior
dcl
devisor
dftbplus science/dftbplus: Change to python3. 2020-05-20 00:36:40 +00:00
dkh
dlib-cpp Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
dlpoly-classic
drawxtl
dvc
eccodes Mark as BROKEN on powerpc64: 2020-05-18 03:05:44 +00:00
elk
elmerfem Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
epte
erd
ergo Some days it does not pay to get out of bed. 2020-05-15 04:25:56 +00:00
erkale - Update math/armadillo to 9.870.2 2020-05-06 21:19:22 +00:00
erkale-pseudopotentials science/erkale-pseudopotentials: Update g20190114 -> g20200426 2020-05-07 00:32:03 +00:00
fastcap
fasthenry
fisicalab
fleur Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
fsom
fvcom
fvcom-mpi
gabedit
gamess-us Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
gchemutils
gdma
getdp
ghemical science/ghemical: Not compatible with the upcoming OpenBabel-3 => disable this internal option 2020-05-10 21:40:08 +00:00
ghmm
gnudatalanguage x11-toolkits/wxgtk30: Update to 3.0.5.1 2020-05-17 05:55:12 +00:00
gpaw-setups
gramps
grib_api
gromacs science/gromacs: Fix plist when MPI=on 2020-05-05 01:20:18 +00:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf
hdf5
hdf5-18
healpix
highfive
hypre
iboview Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
InsightToolkit
isaac-cfd
jdftx
jmol
jstrack
kalzium Update KDE's Applications to 20.04.1 2020-05-15 16:52:00 +00:00
kim-api
kst2 science/kst2: prepare for Qt5-5.15 2020-05-18 16:42:25 +00:00
lammps science/lammps: Enable exceptions 2020-05-15 04:21:24 +00:00
lamprop
latte science/latte: Update 1.2.1 -> 1.2.2 2020-05-07 01:02:37 +00:00
libaec
libccp4
libcint science/libcint: Update 3.0.19 -> 3.0.20 2020-05-15 15:44:22 +00:00
libctl
libefp
libgeodecomp
libghemical
libgridxc Mark BROKEN 2020-05-16 10:02:19 +00:00
libint
libint2
libkml Convert REINPLACE_CMD to patch files 2020-05-08 20:50:41 +00:00
liblinear
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc science/libxc: remove patch 2020-05-02 20:20:28 +00:00
liggghts
lm
luscus
madness
maeparser
massxpert
mbdyn Mark as BROKEN on powerpc64: 2020-05-18 01:38:12 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps
molgif
molscript
molsketch
mpb
mpqc
msms
multiwfn Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
namd
nest
netcdf
netcdf-cxx
netcdf-fortran
nifticlib
nwchem science/nwchem: Update to 7.0.0-release 2020-05-07 07:58:36 +00:00
nwchem-data science/nwchem-data: Update 6.8.1.20190125 -> 7.0.0 2020-05-07 02:54:17 +00:00
octopus Mark BROKEN 2020-05-16 10:03:40 +00:00
openbabel
openkim
openkim-models
opensim-core Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
opensph
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2
paje
paraview
pcmsolver
PETSc
plumed Add compiler:c++11-lang to USES to fix build on GCC-based systems: 2020-05-06 12:00:53 +00:00
pnetcdf
pulseview science/pulseview: Use buildtools, linguisttools as build dependencies. 2020-05-10 12:13:52 +00:00
py-abipy
py-asdf
py-ase
py-avogadrolibs
py-cdo
py-chainer
py-chainer-chemistry
py-chempy Add CONFLICT between science/py-chempy and science/py-pymol 2020-05-21 07:17:55 +00:00
py-coards
py-DendroPy
py-dlib
py-eccodes-python
py-geolinks
py-geomet
py-geometer
py-gpaw Mark BROKEN 2020-05-17 18:33:45 +00:00
py-GPy
py-GPyOpt
py-gsd
py-h5json
py-h5py
py-kim-query New port: science/py-kim-query: Helper routines for querying the OpenKIM repository 2020-05-03 19:38:33 +00:00
py-kinematics
py-kliff New port: science/py-kliff: KIM-based Learning-Integrated Fitting Framework 2020-05-03 20:58:00 +00:00
py-liac-arff Add py-liac-arff 2.4.0 2020-05-16 10:49:37 +00:00
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mlpy
py-mmtf-python
py-molmod science/py-molmod: Update 1.4.5 -> 1.4.7 2020-05-19 00:52:30 +00:00
py-moltemplate New port: science/py-moltemplate: Tool to prepare simulations of molecules, complex molecular assemblies 2020-05-15 03:33:39 +00:00
py-netCDF4
py-obspy
py-oddt
py-OpenFermion
py-openpiv
py-paida
py-paramz
py-phono3py Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
py-phonopy
py-pupynere
py-pyaixi
py-pycsw
py-pydicom
py-PyFR
py-pygeodesy
py-pygeometa
py-pymatgen
py-pymol Add CONFLICT between science/py-chempy and science/py-pymol 2020-05-21 07:17:55 +00:00
py-pyosf
py-PyQuante
py-pysal
py-pyteomics Update to 4.3.2 2020-05-21 04:58:55 +00:00
py-qcelemental
py-qcengine Move sysutils/py-cpuinfo -> sysutils/py-py-cpuinfo to match the PyPI name 2020-05-18 18:56:59 +00:00
py-qspin
py-quantities
py-rmf
py-rmsd
py-ruffus
py-scikit-fuzzy science/py-scikit-fuzzy: Change to default python3 2020-05-21 00:20:33 +00:00
py-scikit-learn
py-scikit-optimize
py-scikit-sparse
py-scimath
py-scipy
py-scoria
py-SimpleSpectral
py-spglib
py-tensorflow
py-veusz
py-ws2300
pybrain
pynn
qbox science: Update 1.69.1 -> 1.71.0 2020-05-09 07:33:58 +00:00
qcl
qiskit-aer devel/libfmt: Update to 6.2.1 2020-05-10 07:43:44 +00:00
qmcpack Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-bayesm math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-cmprsk math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-DCluster math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-e1071 math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-eco math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-Epi math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-epicalc math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-etm math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-FAdist math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-fastICA math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-kernlab math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-snow math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-som math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-udunits2 math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
rdkit
rmf
rubygem-ai4r
rubygem-cdo Update to 1.5.1 2020-05-16 11:04:45 +00:00
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
simgrid
simint
simlib
simsmith
smoldyn
sparta
spglib
step Update KDE's Applications to 20.04.1 2020-05-15 16:52:00 +00:00
svmlight
szip
teem
tfel
tinker
udunits
v_sim
vipster science/vipster: Update 1.18b-174 -> 1.18b.20200514 (to the current revision) 2020-05-15 03:46:25 +00:00
vmd
voro++
votca Add compiler:c++14-lang to USES to fix build on GCC-based systems: 2020-05-06 12:04:05 +00:00
wannier90
wwplot
wxmacmolplt x11-toolkits/wxgtk30: Update to 3.0.5.1 2020-05-17 05:55:12 +00:00
xcrysden science/xcrysden: Update 1.5.60 -> 1.6.2 2020-05-16 20:16:48 +00:00
xdrawchem
xfce4-equake-plugin
yoda
Makefile Re-add port: science/cp2k: Quantum chemistry and solid state physics software package; Update 6.1.0 -> 7.1.0-20200518 2020-05-20 02:27:15 +00:00