Doug Barton 44fa804810 s/X11BASE/LOCALBASE/, or equivalent. ... The X11BASE variable is long gone, however these ports were not updated.		2012-06-24 21:53:38 +00:00
..
adun
ariadne
artemis
avida	- Update to version 2.12.3	2012-06-17 20:04:32 +00:00
babel
belvu
biococoa
biojava
blast
blat
boinc-simap	- Adjust BOINC_* variables to be consistent with new system in boinc-client	2012-05-16 13:46:30 +00:00
chemeq
clustalw
consed
crux
dna-qc
dotter
embassy	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
emboss	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
fasta
fasta3
fastdnaml
finchtv
fluctuate
garlic
genpak	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
gff2ps
gmap
gperiodic	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
grappa
hmmer
iolib
jalview
lagan
lamarc	- Update to version 2.1.8	2012-06-17 20:22:32 +00:00
libgenome
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden
mopac
mrbayes
mummer
muscle
ncbi-toolkit
njplot	s/X11BASE/LOCALBASE/, or equivalent.	2012-06-24 21:53:38 +00:00
ortep3
p5-AcePerl	- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or	2012-06-10 18:42:48 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das	- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or	2012-06-10 18:42:48 +00:00
p5-Bio-Das-Lite
p5-Bio-GFF3	- Update to 1.3	2012-04-26 10:37:09 +00:00
p5-Bio-Glite
p5-Bio-Graphics	- Update to 2.29	2012-06-18 09:30:35 +00:00
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo	- Update to 0.50	2012-06-12 18:55:28 +00:00
p5-Bio-SCF
p5-bioperl	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
p5-bioperl-run	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
paml
phd2fasta
phrap
phred
phylip
phyml
platon
povchem	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
primer3
protomol	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
psi88
py-biopython
pycogent	- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or	2012-06-10 18:42:48 +00:00
pyfasta
pymol	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
python-nexus
rasmol
recombine
ruby-bio
seaview	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
seqan	- Fix maintainer email	2012-06-07 13:04:53 +00:00
seqio
sim4
ssaha
t_coffee	- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or	2012-06-10 18:42:48 +00:00
tinker
treepuzzle
treeviewx	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
tRNAscan-SE
velvet
wise
xdrawchem	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
xmolwt
Makefile	SeqAn is an open source C++ library of efficient algorithms	2012-06-06 17:51:33 +00:00