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freebsd-ports/science
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Max Brazhnikov ffd97a0193 - convert USE_CMAKE to USES 
- while here clean up some ports from CMAKE_VERBOSE, which is intended
  for users

Approved by:	portmgr (miwi)
2013-03-22 20:06:14 +00:00
..
2d-rewriter
2dhf
abinit
afni update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
avogadro - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
bddsolve
bft
bodr
brian
buddy
cdcl Update to 5.4.7 2012-12-19 03:01:41 +00:00
cdf
cdo This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix. 2013-03-19 13:04:30 +00:00
cgnslib - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
checkmol - Update to 0.4d 2013-03-02 06:30:55 +00:00
chemical-mime-data
chemtool
chemtool-devel
clhep
colt Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
crf++
dcl - Update to 5.4.7 2012-12-13 02:25:38 +00:00
devisor Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
dlpoly-classic
dtiquery
ecs Chase french/med upgrade. 2013-03-19 20:35:32 +00:00
elmer-eio
elmer-hutiter
elmer-matc
elmer-meshgen2d
elmergrid
elmerpost
epte
euler
fastcap
fasthenry
felt - Update to version 3.07 2012-12-01 00:00:12 +00:00
flounder - Fix build with clang 2012-12-23 19:11:12 +00:00
fvcom Add new ports science/fvcom and science/fvcom-mpi: 2013-02-20 17:30:45 +00:00
fvcom-mpi Add new ports science/fvcom and science/fvcom-mpi: 2013-02-20 17:30:45 +00:00
fvm Chase french/med upgrade. 2013-03-19 20:35:32 +00:00
g3data
gamess update to 2012/5/1 R2 version. 2013-03-05 11:43:18 +00:00
gchemutils science/openbabel: 2012-12-11 14:19:54 +00:00
gdis - Update to 0.90 2013-03-02 06:29:42 +00:00
getdp - forgot to remove a file in the last update. 2012-11-08 00:02:06 +00:00
ghemical Update to 3.0.0. 2013-01-08 10:50:11 +00:00
ghmm
gnudatalanguage Add an explicit dependency on pkgconf 2013-03-22 12:36:06 +00:00
gramps - Update *_DEPENDS on databases/py-bsddb after _bsddb.so relocation 2013-03-04 11:19:40 +00:00
gromacs - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
gsmc
gsystem - Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8 2012-12-30 12:03:51 +00:00
gtamsanalyzer
gwyddion - Update to 2.31 2013-03-02 14:47:05 +00:00
h5utils
harminv
hdf - Update to 4.2.8. 2012-12-20 05:41:13 +00:00
hdf5
hdf5-18
hdf-java Convert to new option framework 2012-12-13 10:47:44 +00:00
hs-bio - Fix breakage in the DYNAMIC-enabled ports triggered by the recent 2013-02-05 22:26:31 +00:00
InsightToolkit - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
isaac-cfd
jmol Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
jstrack - update to 3.3.4 (old version isn't fetchable anymore) 2012-11-08 11:40:29 +00:00
kalzium Mk/bsd.kde4.mk: 2013-03-22 14:18:02 +00:00
kmovisto - Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8 2012-12-30 12:03:51 +00:00
kst - Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8 2012-12-30 12:03:51 +00:00
kst2 - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
lamprop
libctl Generalize the BROKEN message to remove i386 reference 2013-03-17 14:15:48 +00:00
libghemical This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix. 2013-03-19 13:04:30 +00:00
libint
libkml
liblinear
liboglappth This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix. 2013-03-19 13:04:30 +00:00
libquantum
libsvm
libsvm-python
linsmith - Fix build with clang 2013-02-07 14:36:55 +00:00
massxpert - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
mayavi - Update *_DEPENDS on x11-toolkits/py-tkinter after _tkinter.so relocation 2013-03-02 22:32:48 +00:00
mbdyn
mcstas - Fix warning when building in a jail 2013-03-14 00:52:09 +00:00
medit Upgrade to 2012.02.05. 2012-11-22 21:39:32 +00:00
meep - Convert to Optionsng 2013-03-14 11:20:54 +00:00
mei
minc
minc2
mol2ps - Update to 0.3 2013-03-02 14:54:19 +00:00
mpb
mpqc Fix recent build on tinderbox. Somehow "sc_PsiCCSD_T.3" is not 2013-01-08 04:49:03 +00:00
mpqc-mpich
ncs Bump PORTREVISON after devel/py-sip and devel/qscintilla2 update. 2013-02-03 18:16:54 +00:00
netcdf
netcdf3-ftn
netcdf4 This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix. 2013-03-19 13:04:30 +00:00
netcdf-ftn
nifticlib
omnetpp
openbabel - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
ovt Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol - Trim Makefile headers 2012-12-07 07:13:56 +00:00
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol - Trim Makefile headers 2012-12-06 02:12:52 +00:00
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter Cleanup supporting perl version 5.8 and 5.10, 2012-12-17 06:15:27 +00:00
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Update to 0.011. 2013-01-29 08:50:49 +00:00
p5-PerlMol
p5-Physics-Unit
paje
paraview - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
peekabot This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix. 2013-03-19 13:04:30 +00:00
pnetcdf
psi3 - Fix all cases of 'No newline at end of file' in ports tree 2013-02-01 15:04:00 +00:00
psychopy - Update to 1.75.01 2013-01-15 06:22:00 +00:00
py-biolccc
py-DendroPy
py-h5py
py-hcluster
py-mdp
py-mlpy
py-netCDF4 - Update to 1.0.2 2012-11-27 03:28:28 +00:00
py-obspy-core
py-obspy.db
py-obspy.gse2
py-obspy.imaging
py-obspy.iris
py-obspy.mseed
py-obspy.signal
py-obspy.taup
py-obspy.wav
py-obspy.xseed
py-paida - Update *_DEPENDS on x11-toolkits/py-tkinter after _tkinter.so relocation 2013-03-02 22:32:48 +00:00
py-pydicom
py-scikit-learn Update to version 0.13.1. 2013-03-11 14:11:26 +00:00
py-scimath
py-scipy
py-ws2300 - Update to 1.7 [1] 2012-12-09 13:19:39 +00:00
pybrain
pycdf
pynn - Update to 0.7.5 2013-03-02 05:49:40 +00:00
qcl
qtresistors
R-cran-AMORE update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
R-cran-bayesm update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
R-cran-DCluster update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
R-cran-e1071 update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
R-cran-eco update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
R-cran-Epi update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
R-cran-epicalc update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
R-cran-snow update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
R-cran-som update math/R to 2.15.3, and adjust dependent ports 2013-03-07 04:21:34 +00:00
ruby-dcl
ruby-gphys - Update to 1.2.2 2013-01-22 03:31:11 +00:00
ruby-netcdf
rubygem-ai4r - Add patch to fix build 2013-02-26 02:34:03 +00:00
silo - Update to 4.9 2013-03-02 14:49:28 +00:00
simlib
step Mk/bsd.kde4.mk: 2013-03-22 14:18:02 +00:00
svmlight
szip
udunits
v_sim science/openbabel: 2012-12-11 14:19:54 +00:00
veusz Bump PORTREVISON after devel/py-sip and devel/qscintilla2 update. 2013-02-03 18:16:54 +00:00
vmd Fix minor nit: use the canconical FreeBSD.org form for email addresses. 2013-03-17 16:44:03 +00:00
x11iraf
xmakemol
xmds
Makefile Add new ports science/fvcom and science/fvcom-mpi: 2013-02-20 17:30:45 +00:00