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freebsd-ports/biology
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Joe Marcus Clarke 7f26bf3bf0 unPERLify by using REINPLACE_CMD and SED where appropriate. 
PR:		47654
Submitted by:	Simon 'portlint' Schubert <corecode@corecode.ath.cx>
2003-11-15 20:13:21 +00:00
..
act
update ports/biology/act to latest release (v2)
2003-06-23 13:37:39 +00:00
artemis
De-pkg-comment.
2003-02-21 11:08:38 +00:00
avida
Move inclusion of bsd.port.pre.mk later in the file for conditional BROKEN
2003-06-04 22:43:38 +00:00
babel
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
biojava
ports with possibly unreachable MAINTAINERs
2003-11-02 02:48:08 +00:00
chemeq
* Fix build with GCC3 (-CURRENT).
2003-03-25 12:28:57 +00:00
clustalw
- Add an end-of-string to each line of the input
2003-08-28 04:51:02 +00:00
coalesce
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
crimap
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
deft
De-pkg-comment.
2003-02-21 11:08:38 +00:00
distribfold
Update to 20030425 snapshot
2003-04-25 18:01:46 +00:00
dna-qc
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
emboss
o Main modification
2003-08-18 16:15:10 +00:00
fasta
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
fasta3
unPERLify by using REINPLACE_CMD and SED where appropriate.
2003-11-15 20:13:21 +00:00
fastdnaml
Pet portlint.
2003-11-03 21:01:28 +00:00
flip
De-pkg-comment.
2003-02-21 11:08:38 +00:00
fluctuate
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
garlic
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
genpak
o Main modification
2003-08-18 16:15:10 +00:00
gff2ps
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
gperiodic
Update to 2.0.7.
2003-11-07 16:50:32 +00:00
grappa
De-pkg-comment.
2003-02-21 11:08:38 +00:00
hmmer
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
kinemage
unPERLify by using REINPLACE_CMD and SED where appropriate.
2003-11-15 20:13:21 +00:00
L-Breeder
- Switch to wxgtk2
2003-11-09 19:04:36 +00:00
lamarc
Clear moonlight beckons.
2003-03-07 06:14:21 +00:00
libgenome
- Update to 0.5.2
2003-10-20 22:41:04 +00:00
lsysexp
Chased new mastersite per distfile survey. Notified maintainer.
2003-10-26 08:19:46 +00:00
migrate
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
molden
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
mopac
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
nab
${MASTER_SITES} are slow. This patch adds a mirror site to help
2003-11-06 11:32:30 +00:00
ncbi-toolkit
Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.
2003-11-13 14:45:08 +00:00
nclever
s/NOPORTSDOCS/NOPORTDOCS/ [1]
2003-07-11 11:01:13 +00:00
ortep3
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
p5-AcePerl
utilize SITE_PERL
2003-10-24 12:05:09 +00:00
p5-bioperl
utilize SITE_PERL
2003-10-24 12:05:09 +00:00
paml
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
phylip
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
pkg
…
platon
Mark BROKEN (see bento logs). These ports are scheduled for removal
2003-11-03 03:56:42 +00:00
povchem
Add semi-colons(;) after declare statements that go in the povray scene file
2003-07-14 06:50:15 +00:00
primer3
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
psi88
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
py-biopython
Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.
2003-11-13 14:45:08 +00:00
pymol
LIB_DEPENDS on libglut for libglut rather than soon-to-disappear Mesa3.
2003-11-07 20:45:29 +00:00
rasmol
De-pkg-comment.
2003-02-20 17:07:10 +00:00
recombine
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
ruby-bio
Update to 0.5.3.
2003-10-14 22:25:59 +00:00
seaview
Mark BROKEN: distfile has changed.
2003-11-06 23:15:06 +00:00
seqio
Respect CC and CFLAGS
2003-10-23 00:01:04 +00:00
sim4
ports with possibly unreachable MAINTAINERs
2003-11-02 02:48:08 +00:00
spdbv
De-pkg-comment.
2003-02-21 11:08:38 +00:00
t_coffee
Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.
2003-11-13 14:45:08 +00:00
tinker
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
treepuzzle
De-pkg-comment.
2003-02-21 11:08:38 +00:00
treeviewx
Switch to wxgtk2.
2003-11-14 12:37:26 +00:00
tRNAscan-SE
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
wise
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
xdrawchem
Remove my e-mail address from comment blocks of ports
2003-11-13 10:11:35 +00:00
xmolwt
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
Makefile
new port:biology/lsysexp
2003-09-03 02:23:23 +00:00