John Marino 4fa4056388 biology/mummer: Use OPSYS with OSVERSION ... I don't think selecting clang as a function of OSVERSION is generally desired, but if it's going to happen, make sure FreeBSD-specific conditions are limited to FreeBSD by comparing OPSYS first.		2014-07-19 22:00:16 +00:00
..
ariadne
artemis
avida
babel
biococoa
biojava
blast	Mark as broken: no distinfo provided	2014-06-22 22:06:01 +00:00
blat	Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mk	2014-06-25 08:55:55 +00:00
boinc-simap
chemeq
clustalw
consed
crux
embassy	- Mark BROKEN	2014-06-26 14:38:10 +00:00
emboss
fasta
fasta3
fastdnaml
fluctuate
garlic	biology/garlic: Stage properly to unbreak	2014-07-17 10:13:06 +00:00
gff2ps
gmap
gperiodic
grappa
hmmer	Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS.	2014-07-15 14:54:54 +00:00
iolib
jalview
lagan
lamarc
libsbml
linux-foldingathome	Stagify.	2014-07-06 16:05:34 +00:00
mafft
mapm3
migrate
molden
mopac
mrbayes
mummer	biology/mummer: Use OPSYS with OSVERSION	2014-07-19 22:00:16 +00:00
muscle	Update to 3.8.31.	2014-06-17 21:36:06 +00:00
ncbi-toolkit
njplot
ortep3
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl
p5-bioperl-run	Mark BROKEN: Fails to configure	2014-06-19 21:31:16 +00:00
paml
phd2fasta
phrap
phred
phylip
phyml
platon	biology/platon: Unbreak by hosting known distfiles elsewhere	2014-07-13 11:27:44 +00:00
plink
plinkseq
povchem
primer3
protomol
psi88
py-biopython
pycogent
pyfasta
pymol
python-nexus
recombine
ruby-bio
seaview
seqan	Use gcc on all platforms.	2014-07-10 22:29:52 +00:00
seqio
seqtools	Add OPTIONS_DEFINE=DOCS for ports with %%PORTDOCS%% in the plist.	2014-07-15 23:11:12 +00:00
sim4
ssaha
t_coffee
tinker
treepuzzle
treeviewx
tRNAscan-SE
ugene
velvet	Fix shebang line in Perl and Python scripts.	2014-06-20 12:54:29 +00:00
wise
xmolwt
Makefile