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c3b030a079
0.46.2 has long-standing regressions that are not being addressed, including a seg fault when using --genomebam. Also revert to bundled htslib in preparation for biology/htslib upgrade to 1.10. Kallisto source contains modified bits of htslib 1.4.1 that are incompatible with htslib > 1.9.
12 lines
403 B
Plaintext
12 lines
403 B
Plaintext
--- CMakeLists.txt.orig 2020-07-22 22:36:50 UTC
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+++ CMakeLists.txt
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@@ -42,7 +42,7 @@ ExternalProject_Add(htslib
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BUILD_IN_SOURCE 1
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CONFIGURE_COMMAND autoheader && autoconf && ${PROJECT_SOURCE_DIR}/ext/htslib/configure
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--prefix=${PREFIX} --disable-bz2 --disable-lzma --disable-libcurl
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- BUILD_COMMAND make lib-static
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+ BUILD_COMMAND gmake lib-static
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INSTALL_COMMAND ""
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)
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