| .. |
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abyss
|
all: drop support for expired FreeBSD 14.0
|
2024-10-01 20:56:20 +02:00 |
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ad2vcf
|
biology/ad2vcf: Update to 0.1.6.19
|
2024-05-19 08:41:41 -05:00 |
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andi
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biology/andi: New ports: Efficient estimation of evolutionary distances
|
2024-09-07 14:31:10 -07:00 |
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artemis
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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atac-seq
|
biology/atac-seq: Update to 0.2.0
|
2024-01-10 10:05:41 -06:00 |
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augustus
|
*/*: bump consumers after devel/boost* update
|
2024-10-03 13:25:14 +03:00 |
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avida
|
*/*: Sunset 12.4-RELEASE/12-STABLE from ports tree
|
2023-12-31 01:37:05 +01:00 |
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babel
|
biology/babel: Update WWW
|
2023-10-30 23:37:03 +01:00 |
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bamtools
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*/*: Bump dependencioes after devel/jsoncpp update
|
2024-09-12 09:20:06 -07:00 |
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bamutil
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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barrnap
|
biology/barrnap: Update descr
|
2022-11-24 19:12:18 -08:00 |
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bbmap
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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bcf-score
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biology/bcf-score: Update to 1.20
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2024-10-09 17:23:09 -05:00 |
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bcftools
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biology/bcftools: Update to 1.21
|
2024-10-09 17:23:09 -05:00 |
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bedtools
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biology/bedtools: Update to 2.31.1
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2023-11-08 10:42:09 -06:00 |
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bfc
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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bifrost
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biology/bifrost: Update to 1.3.5
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2024-03-18 09:29:43 -05:00 |
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bio-mocha
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biology/bio-mocha: Update to 1.20
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2024-10-09 17:23:10 -05:00 |
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bioawk
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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biococoa
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audio/opus: bump consumers after update to 1.4
|
2023-04-25 17:17:15 +02:00 |
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biolibc
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biology/biolibc: Update to 0.2.6.4
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2024-05-19 08:40:24 -05:00 |
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biolibc-tools
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biology/biolibc-tools: Move man pages to share/man
|
2024-03-02 18:44:44 +00:00 |
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bioparser
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biology/bioparser: update 3.0.15 → 3.1.0
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2023-08-29 00:32:45 -07:00 |
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biosig
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biology/biosig: fix build with libc++ 19
|
2024-10-11 19:30:49 +02:00 |
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biosoup
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biology/biosoup: Install cmake files
|
2023-08-29 00:32:45 -07:00 |
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biostar-tools
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biology/biostar-tools: Update to 1.11
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2024-06-03 06:38:30 -05:00 |
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bolt-lmm
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*/*: bump consumers after devel/boost* update
|
2024-10-03 13:25:14 +03:00 |
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bowtie
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*/*: Update WWW to use HTTPS for sourceforge.net projects
|
2023-11-06 11:03:47 +01:00 |
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bowtie2
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biology/bowtie2: Update to 2.5.4
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2024-05-24 06:33:53 -05:00 |
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btllib
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biology/btllib: update 1.7.2 → 1.7.3
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2024-07-27 13:19:18 -07:00 |
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bwa
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MAN?PREFIX: eleminate its usage and move man to share/man
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2024-01-10 09:16:01 +01:00 |
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canu
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*/*: bump consumers after devel/boost* update
|
2024-10-03 13:25:14 +03:00 |
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cd-hit
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biology/cd-hit: allow to build without GCC on libomp-less systems
|
2023-08-12 03:37:47 +02:00 |
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cdbfasta
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biology/cdbfasta: Update to 2023.07.10
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2023-07-11 10:40:27 -05:00 |
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checkm
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biology/checkm: update 1.2.0 → 1.2.2
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2024-04-23 01:40:35 -07:00 |
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chip-seq
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biology/chip-seq: Metaport for ChIP-Seq analysis
|
2023-06-14 16:23:37 -05:00 |
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clustal-omega
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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clustalw
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biology/clustalw: Unbreak build for clang 16
|
2023-07-15 18:18:42 -05:00 |
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coverm
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biology/coverm: Broken on i386
|
2024-10-06 11:31:38 -07:00 |
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cufflinks
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*/*: bump consumers after devel/boost* update
|
2024-10-03 13:25:14 +03:00 |
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cytoscape
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biology/cytoscape: Broken on i386
|
2024-05-25 18:45:24 -07:00 |
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ddocent
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
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2023-04-23 09:09:58 +00:00 |
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diamond
|
biology/diamond: Update to v2.1.10
|
2024-10-25 13:20:52 -03:00 |
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dsr-pdb
|
*/*: bump consumers after devel/boost* update
|
2024-10-03 13:25:14 +03:00 |
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edlib
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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emboss
|
*/*: Refactor with IGNORE_WITH_MYSQL
|
2023-12-29 19:24:39 +01:00 |
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erminej
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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exonerate
|
biology/exonerate: remove maintainer (email address gone)
|
2024-10-28 13:41:54 +01:00 |
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fasda
|
biology/fasda: Move man pages to share/man
|
2024-03-02 19:03:05 +00:00 |
|
fasta
|
MAN[1-5]PREFIX: eleminate its usage and move man to share/man
|
2024-01-09 16:41:04 +01:00 |
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fasta3
|
MAN?PREFIX: eleminate its usage and move man to share/man
|
2024-01-10 09:16:01 +01:00 |
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fastahack
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastani
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biology/fastani: New port: Fast Whole-Genome Similarity (ANI) Estimation
|
2024-09-20 20:03:29 -07:00 |
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fastdnaml
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastool
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastp
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biology/fastp: Update to 0.23.4
|
2023-05-31 10:40:00 -05:00 |
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fastq-trim
|
biology/fastq-trim: Move man pages to share/man
|
2024-03-02 19:08:45 +00:00 |
|
fastqc
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biology/fastqc: Update to 0.12.1
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2023-03-04 18:17:20 -06:00 |
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fasttree
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastx-toolkit
|
biology/fastx-toolkit: Unbreak build on 14-CURRENT
|
2023-03-07 11:28:13 -06:00 |
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fermi-lite
|
biology/fermi-lite: port to armv7/aarch64
|
2024-10-28 13:41:48 +01:00 |
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figtree
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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flash
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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fluctuate
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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freebayes
|
biology/freebayes: Drop redundant tabixpp dep
|
2023-01-22 10:42:34 -06:00 |
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garlic
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Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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gatk
|
biology/gatk: Update COMMENT
|
2024-08-04 13:13:15 -07:00 |
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gcta
|
biology/gcta: Unbreak fetch
|
2024-07-08 17:04:44 -05:00 |
|
gemma
|
*/*: bump PORTREVISION after the upgrade to OpenBLAS
|
2024-06-21 19:49:24 +02:00 |
|
generand
|
biology/generand: Move man pages to share/man
|
2024-03-02 19:14:06 +00:00 |
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gff2ps
|
biology/gff2ps: drop maintainership
|
2023-05-21 16:20:36 +00:00 |
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gffread
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
gkl
|
biology/gkl: New port: Accelerated kernel library for genomics
|
2024-08-04 13:09:41 -07:00 |
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gmap
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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gperiodic
|
accessibility/at-spi2-core: update to 2.46.0
|
2023-03-02 06:23:10 +01:00 |
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graphlan
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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groopm
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
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haplohseq
|
*/*: bump consumers after devel/boost* update
|
2024-10-03 13:25:14 +03:00 |
|
hhsuite
|
*/*: bump PORTREVISION after OpenMPI upgrade
|
2024-02-18 10:29:31 +01:00 |
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hisat2
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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hmmer
|
biology/hmmer: update to 3.4
|
2024-10-28 13:41:48 +01:00 |
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htslib
|
biology/htslib: Update to 1.21
|
2024-10-09 17:23:08 -05:00 |
|
hyphy
|
biology/hyphy: Update to 2.5.62
|
2024-10-25 13:20:53 -03:00 |
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igv
|
audio/opus: bump consumers after update to 1.4
|
2023-04-25 17:17:15 +02:00 |
|
infernal
|
biology/infernal: Moved man to share/man
|
2024-02-22 14:23:47 +01:00 |
|
iolib
|
biology/iolib: Moved man to share/man
|
2024-02-22 14:23:48 +01:00 |
|
iqtree
|
*/*: bump consumers after devel/boost* update
|
2024-10-03 13:25:14 +03:00 |
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jalview
|
biology/jalview: Fix build by using gradle-7.6.1 instead of gradle-8.0.1
|
2023-06-18 02:58:53 -07:00 |
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jellyfish
|
biology/jellyfish: Move man pages to share/man
|
2024-03-02 19:17:36 +00:00 |
|
kallisto
|
biology/kallisto: Update to 0.51.1,1
|
2024-09-19 17:46:47 -05:00 |
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kmcp
|
all: Bump after lang/go121 update
|
2024-08-09 06:24:08 +00:00 |
|
lamarc
|
biology/lamarc: Mark BROKEN on 14
|
2023-08-18 08:57:13 +02:00 |
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libbigwig
|
biology/libbigwig: Fix name-clashing in roundup
|
2023-12-28 18:03:34 -05:00 |
|
libcombine
|
biology/libcombine: Fix build with libsbml 5.20.0
|
2023-05-27 12:24:05 +08:00 |
|
libgff
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
libgtextutils
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
libneurosim
|
devel/automake: Update to 1.17
|
2024-07-20 13:27:02 +02:00 |
|
libnuml
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
libsbml
|
textproc/xerces-c3: Update to 3.3.0
|
2024-10-25 23:56:41 +08:00 |
|
libsedml
|
biology/libsedml: Fix build with libsbml 5.20.0
|
2023-05-27 12:24:05 +08:00 |
|
linux-foldingathome
|
biology/linux-foldingathome: Point MASTER_SITES to the new location
|
2024-08-12 14:58:05 +02:00 |
|
locarna
|
biology/locarna: Move man pages to share/man
|
2024-03-03 10:04:08 +00:00 |
|
mafft
|
biology/mafft: Moved man to share/man
|
2024-02-22 14:23:49 +01:00 |
|
mapm3
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
mashmap
|
biology/mashmap: Broken on armv7
|
2024-01-12 17:57:41 -08:00 |
|
mca-calling
|
biology/mca-calling: Core tools for mCA event calling
|
2024-10-24 08:32:05 -05:00 |
|
megahit
|
biology/megahit: Add cmake patch to respect ports build flags
|
2022-11-24 08:10:13 -06:00 |
|
metaeuk
|
biology/metaeuk: update 6 → 7
|
2024-06-01 01:10:52 -07:00 |
|
migrate
|
biology/migrate: fix build on !x86
|
2024-07-09 12:04:31 +02:00 |
|
minimap2
|
biology/minimap2: Add NOT_FOR_ARCHS for most 32-bit processors
|
2024-07-20 14:55:08 -05:00 |
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mmseqs2
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
molden
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
mothur
|
all: drop support for expired FreeBSD 14.0
|
2024-10-01 20:56:20 +02:00 |
|
mrbayes
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
mummer
|
*/*: Update WWW to use HTTPS for sourceforge.net projects
|
2023-11-06 11:03:47 +01:00 |
|
muscle
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
ncbi-blast+
|
biology/ncbi-blast+: Fix build with grpc 1.67.0+
|
2024-10-14 13:26:28 +08:00 |
|
ncbi-cxx-toolkit
|
biology/ncbi-cxx-toolkit: update 28.0.8 → 28.0.9
|
2024-10-06 11:08:26 -07:00 |
|
ncbi-entrez-direct
|
all: Bump after lang/go121 update
|
2024-08-09 06:24:08 +00:00 |
|
ncbi-toolkit
|
all: drop support for expired FreeBSD 14.0
|
2024-10-01 20:56:20 +02:00 |
|
ncbi-vdb
|
biology/ncbi-vdb: remove maintainer (email address gone)
|
2024-10-28 13:41:54 +01:00 |
|
ngs-sdk
|
biology/ngs-sdk: Attempt to fix build on i386
|
2024-04-28 00:10:02 -07:00 |
|
p5-AcePerl
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-ASN1-EntrezGene
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-Cluster
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-Coordinate
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-Das
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-Das-Lite
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-DB-EMBL
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-DB-NCBIHelper
|
biology/p5-Bio-DB-NCBIHelper: Update to 1.7.8
|
2023-12-25 16:59:52 +08:00 |
|
p5-Bio-FeatureIO
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-GFF3
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-Glite
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-Graphics
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-MAGETAB
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-NEXUS
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-Phylo
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-SCF
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-Bio-Variation
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-BioPerl
|
biology/p5-BioPerl: Update to 1.007008
|
2023-10-11 20:57:41 +08:00 |
|
p5-BioPerl-Run
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-transdecoder
|
p5-transdecoder: Update to 5.7.1
|
2023-08-05 15:58:40 -05:00 |
|
p5-TrimGalore
|
biology/p5-TrimGalore: Update to 0.6.10
|
2024-07-23 11:01:28 -04:00 |
|
paml
|
biology/paml: Update to 4.10.7
|
2023-07-08 00:46:53 -03:00 |
|
pbbam
|
*/*: bump consumers after devel/boost* update
|
2024-10-03 13:25:14 +03:00 |
|
peak-classifier
|
biology/peak-classifier: Clean up USES=python
|
2024-04-05 08:43:40 +08:00 |
|
pear-merger
|
MANPREFIX: eliminate its usage
|
2024-01-12 16:11:29 +01:00 |
|
phrap
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
phred
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
phyml
|
biology/phyml: fix build on non-amd64
|
2024-06-16 17:25:18 +02:00 |
|
picard-tools
|
*/*: Refactor java/openjdk7 removal
|
2023-04-04 13:10:53 -05:00 |
|
plink
|
*/*: bump PORTREVISION after the upgrade to OpenBLAS
|
2024-06-21 19:49:24 +02:00 |
|
pooler
|
biology/pooler: Moved man to share/man
|
2024-02-22 14:23:50 +01:00 |
|
primer3
|
biology/primer3: Fix build with llvm16
|
2023-08-05 20:55:50 +02:00 |
|
prodigal
|
biology/prodigal: Update 2.6.3-7 → 2.6.3-16
|
2023-07-22 00:37:33 -07:00 |
|
prodigy-lig
|
biology/prodigy-lig: update 1.1.2 → 1.1.3
|
2024-10-15 08:33:52 -07:00 |
|
protomol
|
graphics/tiff: Update to 4.6.0
|
2024-04-27 14:44:59 +02:00 |
|
psi88
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-bcbio-gff
|
biology/py-bcbio-gff: Update to 0.7.0
|
2023-03-16 17:32:06 -05:00 |
|
py-biom-format
|
biology/py-biom-format: update 2.1.10 → 2.1.16
|
2024-07-13 11:06:57 -07:00 |
|
py-biopython
|
biology/py-biopython: Update to 1.83
|
2024-04-08 02:29:37 +00:00 |
|
py-biosig
|
biology/{.py-}biosig: update 2.6.0 → 2.6.1
|
2024-08-05 07:37:01 -07:00 |
|
py-bx-python
|
biology/py-bx-python: update 0.10.0 → 0.11.0
|
2024-02-12 15:07:35 -08:00 |
|
py-crossmap
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-cutadapt
|
biology/py-cutadapt: update to 4.9
|
2024-06-20 10:38:00 +02:00 |
|
py-deeptools
|
biology/py-deeptools: Update to 3.5.2
|
2023-06-19 07:09:17 -05:00 |
|
py-deeptoolsintervals
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
|
py-dna-features-viewer
|
biology/py-dna-features-viewer: Update to 3.1.3
|
2023-11-04 17:11:34 -05:00 |
|
py-dnaio
|
biology/py-dnaio: Update to 1.2.2
|
2024-10-24 08:09:54 +00:00 |
|
py-ete3
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-Genesis-PyAPI
|
biology/py-Genesis-PyAPI: Add NO_ARCH
|
2023-08-01 00:42:07 +08:00 |
|
py-gffutils
|
biology/py-gffutils: update 0.11.1 → 0.13
|
2024-06-16 18:20:35 -07:00 |
|
py-goatools
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-gtfparse
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-hits
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-htseq
|
biology/py-htseq: Fix build with python-3.11
|
2024-01-21 07:13:35 +00:00 |
|
py-libnuml
|
biology/py-libnuml: Allow build with swig 4.1.0+
|
2023-04-19 02:05:12 +08:00 |
|
py-libsedml
|
biology/py-libsedml: Allow build with swig 4.1.0+
|
2023-04-19 02:05:12 +08:00 |
|
py-loompy
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-macs2
|
biology/py-macs2: Update to 2.2.9.1
|
2023-08-06 13:17:52 -05:00 |
|
py-macs3
|
biology/py-macs3: Update to 3.0.2
|
2024-09-14 08:23:32 -05:00 |
|
py-mrcfile
|
biology/py-mrcfile: update 1.5.2 → 1.5.3
|
2024-07-26 01:57:55 -07:00 |
|
py-multiqc
|
devel/py-pyyaml: Move devel/py-yaml to devel/py-pyyaml
|
2024-07-07 16:05:33 +08:00 |
|
py-newick
|
biology/py-newick: Add new port
|
2024-02-03 00:58:29 +00:00 |
|
py-ont-fast5-api
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-orange3-bioinformatics
|
devel/py-setuptools-scm: update to 8.0.4
|
2024-02-29 02:18:32 -05:00 |
|
py-orange3-single-cell
|
biology/py-orange3-single-cell: Add NO_ARCH
|
2023-08-01 00:42:07 +08:00 |
|
py-pandas-charm
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-py2bit
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
|
py-pybigwig
|
biology/py-pybigwig: Update to 0.3.22
|
2023-12-16 07:59:37 -06:00 |
|
py-pyfaidx
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-pyrodigal
|
biology/py-pyrodigal: update 3.5.1 → 3.5.2
|
2024-09-05 01:48:51 -07:00 |
|
py-pysam
|
biology/py-pysam: update 0.22.0 → 0.22.1
|
2024-04-25 07:52:08 -07:00 |
|
py-PySCeS
|
biology/py-PySCeS: update 1.2.1 → 1.2.2
|
2024-08-03 01:27:31 -07:00 |
|
py-python-libsbml
|
biology/py-python-libsbml: relax python version requirement
|
2023-12-03 15:02:23 +03:00 |
|
py-pywgsim
|
biology/py-pywgsim: fix build
|
2024-06-07 11:11:35 +03:00 |
|
py-resdk
|
biology/py-resdk: update 21.1.0 → 21.2.0
|
2024-07-12 01:58:00 -07:00 |
|
py-scikit-bio
|
biology/py-scikit-bio: update 0.6.1 → 0.6.2
|
2024-07-12 22:17:53 -07:00 |
|
py-valerius
|
biology/py-valerius: New port: Python bioinformatics tools
|
2022-10-03 21:06:22 -07:00 |
|
py-xenaPython
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
pyfasta
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
python-nexus
|
biology/python-nexus: Update to 2.9.0 and fix build with python-3.11
|
2024-02-03 00:58:29 +00:00 |
|
R-cran-Biobase
|
biology/R-cran-Biobase: New port
|
2023-12-15 13:55:44 +01:00 |
|
R-cran-BiocGenerics
|
biology/R-cran-BiocGenerics: New port
|
2023-12-15 13:55:44 +01:00 |
|
R-cran-BiocManager
|
biology/R-cran-BiocManager: Update version 1.30.24=>1.30.25
|
2024-09-08 19:28:55 +02:00 |
|
rainbow
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
rampler
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
readseq
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
rna-seq
|
biology/rna-seq: Add biology/star dep to metaport
|
2023-07-31 09:36:06 -05:00 |
|
ruby-bio
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
|
rubygem-bio
|
biology/rubygem-bio: Update to 2.0.5
|
2023-09-30 08:46:30 +08:00 |
|
rubygem-bio-executables
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
|
rubygem-bio-old-biofetch-emulator
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
|
rubygem-bio-shell
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
|
salmon
|
*/*: bump consumers after devel/boost* update
|
2024-10-03 13:25:14 +03:00 |
|
sam2pairwise
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
samtools
|
biology/samtools: Update to 1.21
|
2024-10-09 17:23:09 -05:00 |
|
scrm
|
biology/scrm: Move man pages to share/man
|
2024-03-02 19:59:23 +00:00 |
|
seaview
|
MANPREFIX: eliminate its usage
|
2024-01-12 16:11:29 +01:00 |
|
seqan
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
seqan1
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
seqan3
|
biology/seqan3: update 3.2.0 → 3.3.0
|
2023-09-10 11:10:47 -07:00 |
|
seqan-apps
|
biology/seqan-apps: Fix build with llvm16
|
2023-08-06 23:53:04 +02:00 |
|
seqkit
|
all: Bump after lang/go121 update
|
2024-08-09 06:24:08 +00:00 |
|
seqtk
|
biology/seqtk: Update to 1.4
|
2023-05-23 17:42:13 -05:00 |
|
seqwish
|
biology/seqwish: update 0.7.9 → 0.7.10
|
2024-05-18 10:29:58 -07:00 |
|
sigviewer
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
slclust
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
smithwaterman
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
snpeff
|
*/*: Update WWW to use HTTPS for sourceforge.net projects
|
2023-11-06 11:03:47 +01:00 |
|
spoa
|
biology/spoa: Broken on i386
|
2024-04-11 21:05:12 -07:00 |
|
sra-tools
|
cleanup: remove occurrences of WITH_DEBUG
|
2024-04-12 08:04:05 +02:00 |
|
stacks
|
biology/stacks: Unbreak build on aarch64
|
2024-05-28 16:17:25 -05:00 |
|
star
|
biology/star: Use EXTRACT_AFTER_ARGS to omit unused htslib dir
|
2024-05-05 09:58:47 -05:00 |
|
stringtie
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
subread
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
tabixpp
|
biology/tabixpp: Deprecate
|
2023-01-22 11:01:57 -06:00 |
|
taxonkit
|
all: Bump after lang/go121 update
|
2024-08-09 06:24:08 +00:00 |
|
treekin
|
biology/treekin: Move man pages to share/man
|
2024-03-02 20:02:27 +00:00 |
|
treepuzzle
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
trimadap
|
biology/trimadap: Update to 0.1.4
|
2024-10-18 06:37:12 -05:00 |
|
trimmomatic
|
biology/trimmomatic: Release to ports@
|
2024-04-05 19:12:17 -05:00 |
|
tRNAscan-SE
|
biology/tRNAscan-SE: Update to 2.0.11
|
2022-10-12 12:45:24 +01:00 |
|
ucsc-userapps
|
biology/ucsc-userapps: Replace dependencies
|
2023-12-30 08:16:41 +01:00 |
|
ugene
|
MAN?PREFIX: eleminate its usage and move man to share/man
|
2024-01-10 09:16:01 +01:00 |
|
unikmer
|
all: Bump after lang/go121 update
|
2024-08-09 06:24:08 +00:00 |
|
vcf2hap
|
biology/vcf2hap: Move man pages to share/man
|
2024-03-02 20:07:47 +00:00 |
|
vcf-split
|
biology/vcf-split: Move man pages to share/man
|
2024-03-02 20:04:57 +00:00 |
|
vcflib
|
biology/vcflib: add upstream reference for zig >= 0.11
|
2024-05-20 16:42:43 +02:00 |
|
vcftools
|
biology/vcftools: Move man pages to share/man
|
2024-03-02 20:35:56 +00:00 |
|
velvet
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
viennarna
|
biology/viennarna: Move man pages to share/man
|
2024-03-02 20:35:56 +00:00 |
|
vsearch
|
biology/vsearch: Update to 2.29.1
|
2024-10-27 17:51:28 -05:00 |
|
vt
|
biology/vt: Bump PORTREVISION for biology/htslib update
|
2023-01-05 19:19:19 -06:00 |
|
wfa2-lib
|
biology/wfa2-lib: fix build without libomp
|
2024-08-04 14:00:47 +02:00 |
|
wise
|
all: drop support for expired FreeBSD 14.0
|
2024-10-01 20:56:20 +02:00 |
|
Makefile
|
biology/mca-calling: Core tools for mCA event calling
|
2024-10-24 08:32:05 -05:00 |
